View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_2 (Length: 631)
Name: NF12728_low_2
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_2 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: scaffold0370 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Complemental strand, 13668 - 13071
Alignment:
| Q |
18 |
gtaactaatacaattaccaacctctgaacttgacatctcatcaaggactgttacatctttttcttcactcagttgatgtactttatttataagtgaacaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13668 |
gtaactaatacaattaccaacctctgaacttgacatctcatcaaggagtgttacatctttttcttcactcagttgatgtactttatttataagtgaacaa |
13569 |
T |
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| Q |
118 |
tacttgtaatagttgagaatctggaattgaaaaagtaacatataagatcaagttctacatgcatgttttgtgggccactgtggaccgaacttaaaatcgt |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
13568 |
tacttgtaatagttgagattctggaattgaaaaagtaacatataagatcaagttctacatgcatgtttggtgggccgctgtggaccgaacttaaaatcgt |
13469 |
T |
|
| Q |
218 |
ctaaaaatccaacgataactaatctcagtctcttaaagtagaaattcatgatctcgttgttgtaacatctaattaagacaatgacctgattggtgcaagt |
317 |
Q |
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| T |
13468 |
ctaaaaatccaacgataactaatctcagtctcttaaagtagaaattcatgatctcgttgttgtaacatctaattaagacaatgacctgattggtgcaagt |
13369 |
T |
|
| Q |
318 |
ttttcaaagacagagaaagaaaacatgtccctcaaaatttaactcaattttttccccacattttatcaaactgacaccagttaaatcgccgtctcaatcg |
417 |
Q |
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| T |
13368 |
ttttcaaagacaaagaaagaaaacatgtccctcaaaatttaactcaatttttttcccacattttatcaaactgacaccagttaaatcgccgtctcaatcg |
13269 |
T |
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| Q |
418 |
tgaaaacggaacggatcatggacttctacttctgagtgcaaatgcaattatattaaatgcatagattgtagtttttaacatacattctcatgatacaact |
517 |
Q |
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| T |
13268 |
tgaaaacggagcggatcatggacttctacttctgagtgcaaatgcaattatattaaatgcatagattgtagtttttaacatacattctcatgatacaact |
13169 |
T |
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| Q |
518 |
cttccaatttcaaaatcctttgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataattttccgtttttggcttct |
615 |
Q |
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| T |
13168 |
ctttcaatttcaaaatcctttgctttgcttcatactttttgttatacttctgattcaatttttctctcaatgaatataattttccgtttatggcttct |
13071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 38692185 - 38692058
Alignment:
| Q |
28 |
caattaccaacctctgaacttgacatctcatcaaggactgttacatcttttt-cttcactcagttgatgtactttatttataagtgaacaatacttgtaa |
126 |
Q |
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| T |
38692185 |
caattaccagcctctgaacttgacatctcatcaaggactcttacatcttttttcttcactcagttgatgtactttatttattagtgaacaatacttgtaa |
38692086 |
T |
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| Q |
127 |
tagttgagaatctggaattgaaaaagta |
154 |
Q |
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| T |
38692085 |
taatggagaatctacaattgaaaaagta |
38692058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 293 - 434
Target Start/End: Complemental strand, 38692007 - 38691865
Alignment:
| Q |
293 |
agacaatgacctgattggtgcaagtttttcaaagac-agagaaagaaaacatgtccctcaaaatttaactcaattttttccccacattttatcaaactga |
391 |
Q |
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| T |
38692007 |
agacaatgacctgattggtacaagtttttcaaagactagagaatacaaatatgtccctcaaaatttaactaatttgttttccctcgttcttttaaactga |
38691908 |
T |
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| Q |
392 |
caccagttaaatcgccgtctcaatcgtgaaaacggaacggatc |
434 |
Q |
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| T |
38691907 |
caccaattaaatcaccgtctcaatcgtgaaaacgaagcggatc |
38691865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 38634445 - 38634327
Alignment:
| Q |
32 |
taccaacctctgaacttgacatctcatcaaggactgttacatctttttcttcactcagttgatgtactttatttataagtgaacaatacttgtaatagtt |
131 |
Q |
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| T |
38634445 |
taccaacctctgaatttgacatctcatctagggttgatacatctttttcttctgccagctgatggactttatttataagtgaacaatgctggtaatagtg |
38634346 |
T |
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| Q |
132 |
gagaatctggaattgaaaa |
150 |
Q |
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| T |
38634345 |
gagaatctgaaatagaaaa |
38634327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 615
Target Start/End: Complemental strand, 38638103 - 38638010
Alignment:
| Q |
522 |
caatttcaaaatcctttgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataattttccgtttttggcttct |
615 |
Q |
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| T |
38638103 |
caatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttct |
38638010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 38638699 - 38638613
Alignment:
| Q |
32 |
taccaacctctgaacttgacatctcatcaaggactgttacatctttttcttcactcagttgatgtactttatttataagtgaacaat |
118 |
Q |
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| T |
38638699 |
taccaacctctgaacgtgacatcttatcaagggctgctatatctttttctttagccaactgatgcactttatttattagcgaacaat |
38638613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 600
Target Start/End: Complemental strand, 38690725 - 38690647
Alignment:
| Q |
522 |
caatttcaaaatcctttgctttgcttcatactttttcttatacttctgattcaatttttccctcaatgaatataatttt |
600 |
Q |
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| T |
38690725 |
caatttgaaaatcctttgatatgcttcatccttattcttatgcttctctatcaattttgcactcaaagaatataatttt |
38690647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 38691145 - 38691104
Alignment:
| Q |
124 |
taatagttgagaatctggaattgaaaaagtaacatataagat |
165 |
Q |
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| T |
38691145 |
taatagttgagaatctgcagttgaaaaattaacatataagat |
38691104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 40760051 - 40760134
Alignment:
| Q |
69 |
tacatctttttcttcactcagttgatgtactttatttataagtgaacaatacttgtaatagttgagaatctggaattgaaaaag |
152 |
Q |
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| T |
40760051 |
tacatctttttcgtcaatcagctgttgaacttcatttgtatgtgaacaatactggtaatagtggagaatctgaaactgaaaaag |
40760134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 40766914 - 40766998
Alignment:
| Q |
37 |
acctctgaacttgacatctcatcaaggactgttacatctttttcttcactcagttgatgtactttatttataagtgaacaatact |
121 |
Q |
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| T |
40766914 |
acctctgaacaagaaatctcatcaagggatgctacatctttttcttcaaccagctgctggactttgtctataagtgaagaatact |
40766998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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