View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_21 (Length: 271)
Name: NF12728_low_21
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 10508443 - 10508604
Alignment:
| Q |
79 |
gcaacgttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatctcaccattggnnnnnnnggtaacaagacta |
178 |
Q |
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| T |
10508443 |
gcaacgttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatcttactattggcttttttggtaacaagacta |
10508542 |
T |
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| Q |
179 |
tacaacaagtaaatgctactgtaccagatatagtaaacaattacatagagaatatcaaggta |
240 |
Q |
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| T |
10508543 |
tacaacaagtaaatgctactgtaccagatatagtaaacaattacatagagaatatcaaggta |
10508604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 10502737 - 10502898
Alignment:
| Q |
79 |
gcaacgttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatctcaccattggnnnnnnnggtaacaagacta |
178 |
Q |
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| T |
10502737 |
gcaactttgatccccaaagaagactatttttccaaagccttatacacatttgatattggtcaaaatgatcttattggtggttattttggtaacaagacta |
10502836 |
T |
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| Q |
179 |
tacaacaagtaaatgctactgtaccagatatagtaaacaattacatagagaatatcaaggta |
240 |
Q |
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| T |
10502837 |
taaaacaagtcaatgctactgtacccgatatagtaaacaatttcatagtgaatatcaaggta |
10502898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 10485405 - 10485566
Alignment:
| Q |
79 |
gcaacgttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatctcaccattggnnnnnnnggtaacaagacta |
178 |
Q |
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| T |
10485405 |
gcaacgttgatccccaaagaagaatatttttccaaagccttgtacacatttgatattggtcaaaatgatcttactggtggtttttttggtaatgtgacta |
10485504 |
T |
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| Q |
179 |
tacaacaagtaaatgctactgtaccagatatagtaaacaattacatagagaatatcaaggta |
240 |
Q |
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| T |
10485505 |
tacaacaagtcaatgctactatacccgatatagtaaacaatttcatagtgaatatcaaggta |
10485566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 10499810 - 10499971
Alignment:
| Q |
79 |
gcaacgttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatctcaccattggnnnnnnnggtaacaagacta |
178 |
Q |
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| T |
10499810 |
gcaacattgatccctaaagaagattattattccaaagccttatacacattcgatattggtcaaaatgatcttactgctggattttttggtaataagacta |
10499909 |
T |
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| Q |
179 |
tacaacaagtaaatgctactgtaccagatatagtaaacaattacatagagaatatcaaggta |
240 |
Q |
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| T |
10499910 |
tacaacaagtcaacactactgtgcctgatatagtgaagagttttatagacaatatcaaggta |
10499971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 10480449 - 10480513
Alignment:
| Q |
85 |
ttgatacccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatct |
149 |
Q |
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| T |
10480449 |
ttgatgcccaaagaagagtatttctctaaggctttgtacacatttgatattggtcaaaatgatct |
10480513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 37441832 - 37441893
Alignment:
| Q |
91 |
cccaaagaagattatttctccaaagccttatacatatttgatattggtcaaaatgatctcac |
152 |
Q |
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| T |
37441832 |
cccaaagaagagtatttttccgaggctttatacacttttgatattggtcaaaatgatctcac |
37441893 |
T |
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