View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_25 (Length: 260)
Name: NF12728_low_25
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 4741936 - 4741704
Alignment:
| Q |
19 |
aaagtgatgtaaacatttgaattttccttattttgaattccaaaccgaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaataag |
118 |
Q |
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| T |
4741936 |
aaagtgatgtaaacatttgaattttcctaattttgaattccaaaccgaatgaaacggcaaatcaatttactaaacacagcatattaacaaacaaaagaag |
4741837 |
T |
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| Q |
119 |
tcttttgatgatgtgacaagtttcccaataatttgttagtttaattgggtattaagttacct---agaaatagttttgatgatcacaaatgaacagtttc |
215 |
Q |
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| T |
4741836 |
tcttttaatgatgtgacaagtttcccactgatttgttggtttaattgggaat--aattaccttaaaaatatagttttgatgatgacaaatgaacagtttc |
4741739 |
T |
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| Q |
216 |
taactttctacttcaacatgttcttgaggtctgtg |
250 |
Q |
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| T |
4741738 |
taactttctacttcaacaagtttttgaggtctgtg |
4741704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 4721108 - 4721031
Alignment:
| Q |
19 |
aaagtgatgtaaacatttgaattttccttattttgaattccaaaccgaatgaaacggcaaatcaatttactaaacaca |
96 |
Q |
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| T |
4721108 |
aaagtgatgtaaacatttgaattttccttattttgaattccaaaccgaatgaaacggcaaatcaatttactaaacaca |
4721031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 4742854 - 4742782
Alignment:
| Q |
177 |
acctagaaatagttttgatgat--cacaaatgaacagtttctaactttctacttcaacatgttcttgaggtct |
247 |
Q |
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| T |
4742854 |
acctggaaatagttttgatgatgacacaactgaataatttctaactttatacttcaacatgttcttgaggtct |
4742782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 4722450 - 4722380
Alignment:
| Q |
134 |
acaagtttcccaataatttgttagtttaattgggtattaagttacctagaaatagttttgatgatcacaaat |
205 |
Q |
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| T |
4722450 |
acaagtttcccactaatttgttggtttaattgagtagt-agttacctggaaatagttttaatgatgacaaat |
4722380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 4726220 - 4726160
Alignment:
| Q |
54 |
aattccaaaccgaatgaaacggcaaatcaatttactaaacacagcatatt-aacaaacaaaa |
114 |
Q |
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| T |
4726220 |
aattccaaaccgaatgagacagcaaatcgatttactaaactc-gcatattaaacaaacaaaa |
4726160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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