View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_27 (Length: 247)
Name: NF12728_low_27
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 52422394 - 52422176
Alignment:
| Q |
19 |
agttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagag |
118 |
Q |
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| T |
52422394 |
agttagagtgaagatccggagaaaaagttgagctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagag |
52422295 |
T |
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| Q |
119 |
tgttttcggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagcattatggtctagagca |
218 |
Q |
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| T |
52422294 |
tgttttcggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagcattatggtctagagca |
52422195 |
T |
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| Q |
219 |
gcaagaagtggcgcctttg |
237 |
Q |
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| T |
52422194 |
gcaagaagtggcgcctttg |
52422176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 42714625 - 42714493
Alignment:
| Q |
51 |
ctagccgcaggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagagtgttttcggcccctctggccctgtcctccatt |
150 |
Q |
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| T |
42714625 |
ctagcagcaggccggtattcagggaaaagtcggccagacttgtaccgaacaccgcaagcattgcagagtgtttttggccccattggacctgccctccatt |
42714526 |
T |
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| Q |
151 |
gtggagtcttcgtcgcctcacaatgcgtgcatt |
183 |
Q |
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| T |
42714525 |
gtggagtcttggttatctcacaatgcatgcatt |
42714493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 24480286 - 24480367
Alignment:
| Q |
126 |
ggcccctctggccctgtcctccattgtggagtcttcgtcgcctcacaatgcgtgcattgccggacaagtcccaaagcattat |
207 |
Q |
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| T |
24480286 |
ggcccctctgaccctatcctccattgtggagtcttcgtcgcctcacaatgtgtacatttcctcacaagtaccaaagcattat |
24480367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 40377534 - 40377598
Alignment:
| Q |
60 |
ggccggtattcagggcagagtcggcctgacttgtaccgaacaccgcaagcattgcagagtgtttt |
124 |
Q |
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| T |
40377534 |
ggccggtattcaggatagaggcggccggacctgtaccgaacaccacaagcattgcagagcgtttt |
40377598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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