View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12728_low_28 (Length: 240)

Name: NF12728_low_28
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12728_low_28
NF12728_low_28
[»] chr6 (8 HSPs)
chr6 (69-172)||(4460236-4460339)
chr6 (65-170)||(17993482-17993587)
chr6 (173-221)||(12343153-12343201)
chr6 (173-221)||(10521886-10521934)
chr6 (173-219)||(13043510-13043556)
chr6 (173-220)||(551203-551250)
chr6 (173-220)||(24618639-24618686)
chr6 (173-217)||(24587514-24587558)
[»] chr4 (22 HSPs)
chr4 (69-172)||(53791188-53791291)
chr4 (74-160)||(44769853-44769941)
chr4 (173-224)||(23444303-23444354)
chr4 (173-224)||(47661895-47661946)
chr4 (173-221)||(6271755-6271803)
chr4 (173-221)||(50384142-50384190)
chr4 (173-220)||(42375063-42375110)
chr4 (173-224)||(51265498-51265549)
chr4 (173-221)||(40789232-40789280)
chr4 (173-221)||(52028602-52028650)
chr4 (173-220)||(47404623-47404670)
chr4 (173-220)||(55090034-55090081)
chr4 (178-224)||(31430495-31430541)
chr4 (173-209)||(30861823-30861859)
chr4 (173-220)||(25818411-25818458)
chr4 (173-224)||(28693957-28694008)
chr4 (177-224)||(35682223-35682270)
chr4 (173-220)||(45591448-45591495)
chr4 (184-221)||(24006107-24006144)
chr4 (187-220)||(26186054-26186087)
chr4 (184-220)||(49469946-49469982)
chr4 (173-221)||(53954663-53954711)
[»] chr3 (15 HSPs)
chr3 (74-170)||(22489734-22489830)
chr3 (173-221)||(30476511-30476559)
chr3 (173-221)||(33689229-33689277)
chr3 (173-221)||(47492084-47492132)
chr3 (173-220)||(29031752-29031799)
chr3 (173-220)||(43139747-43139794)
chr3 (173-224)||(47677289-47677340)
chr3 (173-221)||(1801483-1801531)
chr3 (177-224)||(30734436-30734483)
chr3 (173-220)||(51046111-51046158)
chr3 (36-69)||(1261463-1261496)
chr3 (187-220)||(45103147-45103180)
chr3 (118-150)||(19884717-19884749)
chr3 (173-221)||(41753017-41753065)
chr3 (184-220)||(55223296-55223332)
[»] chr2 (14 HSPs)
chr2 (69-168)||(7395592-7395691)
chr2 (173-224)||(16514477-16514528)
chr2 (173-220)||(2894016-2894063)
chr2 (173-220)||(14229391-14229438)
chr2 (173-221)||(2828637-2828685)
chr2 (173-221)||(6722004-6722052)
chr2 (173-221)||(15011333-15011381)
chr2 (173-221)||(38933640-38933688)
chr2 (173-224)||(37762035-37762086)
chr2 (173-224)||(37961759-37961810)
chr2 (173-221)||(6217261-6217309)
chr2 (173-224)||(29508724-29508776)
chr2 (173-224)||(14470626-14470677)
chr2 (173-217)||(29925611-29925655)
[»] chr1 (24 HSPs)
chr1 (69-168)||(45529506-45529605)
chr1 (173-227)||(29179628-29179682)
chr1 (173-224)||(17127598-17127649)
chr1 (173-224)||(48993951-48994002)
chr1 (173-221)||(741539-741587)
chr1 (173-221)||(32540785-32540833)
chr1 (173-224)||(5995422-5995473)
chr1 (173-224)||(29371421-29371472)
chr1 (174-220)||(1819527-1819573)
chr1 (173-221)||(15220864-15220912)
chr1 (173-221)||(37155099-37155147)
chr1 (173-221)||(46333983-46334031)
chr1 (173-220)||(1091582-1091629)
chr1 (173-220)||(4609049-4609096)
chr1 (173-224)||(34062262-34062313)
chr1 (173-220)||(45728340-45728387)
chr1 (173-220)||(8337889-8337936)
chr1 (173-220)||(9157363-9157410)
chr1 (178-221)||(28928816-28928859)
chr1 (173-220)||(33219626-33219673)
chr1 (173-208)||(44706834-44706869)
chr1 (173-220)||(47303448-47303495)
chr1 (173-224)||(48498468-48498519)
chr1 (187-221)||(38674542-38674576)
[»] chr8 (12 HSPs)
chr8 (173-224)||(5033214-5033265)
chr8 (173-224)||(33841625-33841676)
chr8 (173-224)||(35441003-35441054)
chr8 (172-220)||(34229693-34229741)
chr8 (173-220)||(8243426-8243473)
chr8 (173-224)||(8796475-8796526)
chr8 (173-224)||(10086810-10086861)
chr8 (173-209)||(34541852-34541888)
chr8 (173-211)||(6296658-6296696)
chr8 (184-221)||(31159915-31159952)
chr8 (173-221)||(5667150-5667198)
chr8 (184-220)||(35031652-35031688)
[»] chr5 (13 HSPs)
chr5 (173-224)||(3899892-3899943)
chr5 (173-224)||(16971197-16971248)
chr5 (173-221)||(2953243-2953291)
chr5 (173-221)||(29699420-29699468)
chr5 (173-220)||(16439191-16439238)
chr5 (173-221)||(19655211-19655259)
chr5 (173-220)||(2093975-2094022)
chr5 (173-221)||(38134410-38134458)
chr5 (173-220)||(3180098-3180145)
chr5 (173-224)||(30117862-30117913)
chr5 (178-224)||(16802502-16802548)
chr5 (173-222)||(19598385-19598433)
chr5 (184-220)||(28818981-28819017)
[»] scaffold0586 (1 HSPs)
scaffold0586 (173-221)||(7084-7132)
[»] scaffold1033 (1 HSPs)
scaffold1033 (173-220)||(2266-2313)
[»] scaffold1029 (1 HSPs)
scaffold1029 (173-220)||(2266-2313)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-224)||(49737-49788)
[»] chr7 (12 HSPs)
chr7 (173-224)||(11016922-11016973)
chr7 (173-224)||(15027595-15027646)
chr7 (173-221)||(4290598-4290646)
chr7 (173-221)||(7671948-7671996)
chr7 (173-221)||(41018265-41018313)
chr7 (173-221)||(42628348-42628396)
chr7 (173-220)||(27028831-27028878)
chr7 (173-208)||(38975858-38975893)
chr7 (125-170)||(15568864-15568909)
chr7 (173-221)||(29053351-29053399)
chr7 (173-221)||(34854732-34854780)
chr7 (184-220)||(48000732-48000768)
[»] scaffold0047 (1 HSPs)
scaffold0047 (173-221)||(63810-63858)
[»] scaffold0481 (1 HSPs)
scaffold0481 (173-224)||(2921-2972)
[»] scaffold0161 (1 HSPs)
scaffold0161 (173-221)||(27257-27305)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 4460236 - 4460339
Alignment:
Q  69 agtatgtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgccttggga 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4460236 agtatgtgtttgttgtaccggtagaaataggaaaaaacgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgttcaaaatgccttggga 4460335  T
Q  169 cgtg 172  Q
    ||||    
T  4460336 cgtg 4460339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 17993587 - 17993482
Alignment:
Q  65 attaagtatgtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgcctt 164  Q
    |||||| | |||||||||||| |||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||    
T  17993587 attaagaacgtgtttgttgtagcggtggaaatagaaaaaaacgccgtttgcacaaaagcttcaaaaggtagcttctttattttcacgttcaaaacgcctt 17993488  T
Q  165 gggacg 170  Q
    ||||||    
T  17993487 gggacg 17993482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 12343153 - 12343201
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  12343153 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 12343201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 10521934 - 10521886
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  10521934 aatgcttgtgtttctctctctttcataagcattgtgacattgtgattgg 10521886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 13043510 - 13043556
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgatt 219  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||    
T  13043510 aatgcttgtgtttctctctctttcacaagcattgtgatattgtgatt 13043556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 551250 - 551203
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| ||||||||||||||||| ||||||| || ||||||||    
T  551250 aatgcttgtgtttctctctctttcacaaacattgtggcattgtgattg 551203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 24618686 - 24618639
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||| ||||||| ||||| ||||||||    
T  24618686 aatgcttgtgtttctctctctttcataagcattatgacattgtgattg 24618639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 24587514 - 24587558
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtga 217  Q
    |||||||||| ||||| || ||||||||||||||||||| |||||    
T  24587514 aatgcttgtgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 53791291 - 53791188
Alignment:
Q  69 agtatgtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgccttggga 168  Q
    |||| |||||||||||  |||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||    
T  53791291 agtacgtgtttgttgtggcggtggaaatagaaaaaaacgccgtttgcacaaaagctacaaatggtagcttctttattttcactttcaaaatgcctcggga 53791192  T
Q  169 cgtg 172  Q
    ||||    
T  53791191 cgtg 53791188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 44769853 - 44769941
Alignment:
Q  74 gtgtttgttgtaccggtagaaataggaaaaaatgc--cgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatg 160  Q
    |||||||||||| |||| ||||||| ||||||  |  |||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  44769853 gtgtttgttgtagcggtggaaatagaaaaaaaaacggcgtttgtacaaaagctacaaaaggtaacttctttattttcacgttcaaaatg 44769941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 23444354 - 23444303
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  23444354 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 23444303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 47661895 - 47661946
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  47661895 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 47661946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6271755 - 6271803
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6271755 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 6271803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 50384190 - 50384142
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  50384190 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 50384142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 42375063 - 42375110
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  42375063 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 42375110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 51265498 - 51265549
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||||||    
T  51265498 aatgcttgtgtttctctctctttcacaagcattgtgacattatgattggtca 51265549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 40789232 - 40789280
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  40789232 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgg 40789280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 52028602 - 52028650
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  52028602 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgg 52028650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 47404670 - 47404623
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||    
T  47404670 aatgcttgggtttctctctctttcacaagcattgtgacattgtgattg 47404623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 55090081 - 55090034
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  55090081 aatgcttgtgtctctctctctttcacaagcattgtgacattgtgattg 55090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 31430541 - 31430495
Alignment:
Q  178 ttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  31430541 ttgtgtttctctctctttcataagcattgtgacattgtgattggtca 31430495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 30861859 - 30861823
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtga 209  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30861859 aatgcttgtgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 25818458 - 25818411
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| ||||||||||||||||| |||||||||| ||||||||    
T  25818458 aatgattgtgtttctctctctttcacaatcattgtgacattgtgattg 25818411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 28694008 - 28693957
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| ||||||||||||||||| |||||||| | ||||||||||||    
T  28694008 aatgtttgtgtttctctctctttcacaaacattgtgatattgtgattggtca 28693957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 35682223 - 35682270
Alignment:
Q  177 cttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||| |||||| ||||||||||||||||||||| |||||| |||||    
T  35682223 cttgtgtttctctatctttcacaagcattgtgacattgtgatcggtca 35682270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 45591495 - 45591448
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  45591495 aatgtttgtgtttctctctctttcacaagcattgtgacattatgattg 45591448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 24006144 - 24006107
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||||||||||||||||||||||| || |||||||||    
T  24006144 ttctctctctttcacaagcattgtgtcattgtgattgg 24006107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 26186087 - 26186054
Alignment:
Q  187 tctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||||||||||||||||| ||||||||    
T  26186087 tctctctttcacaagcattgtgacattgtgattg 26186054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 49469982 - 49469946
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||||||||||  ||||||||||||||||||    
T  49469982 ttctctctctttcacaataattgtgacactgtgattg 49469946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 53954663 - 53954711
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||| ||| ||||| |||||||||||||||||||||| ||| |||||    
T  53954663 aatgctagtgtttctcactctttcacaagcattgtgacattgtaattgg 53954711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 22489734 - 22489830
Alignment:
Q  74 gtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgccttgggacg 170  Q
    |||||||||||  |||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||    
T  22489734 gtgtttgttgtggcggtggaaatagaaaaaaacgccgtttgcacaaaagctagaaaaggtagcttctttattttcatgttcaaaatgcctcgggacg 22489830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 30476559 - 30476511
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  30476559 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 30476511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 33689229 - 33689277
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  33689229 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 33689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 47492132 - 47492084
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47492132 aatgcttgtgtttctctctttttcacaagcattgtgacattgtgattgg 47492084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 29031799 - 29031752
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  29031799 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 29031752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 43139794 - 43139747
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  43139794 aatgcttgtgtttctctctctttcacaagcattctgacattgtgattg 43139747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 47677340 - 47677289
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||| |||||    
T  47677340 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtca 47677289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1801531 - 1801483
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| ||||||||||||||||||||||||| || |||||||||    
T  1801531 aatgtttgtgtttctctctctttcacaagcattgtggcattgtgattgg 1801483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 30734483 - 30734436
Alignment:
Q  177 cttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||| |||||| ||||||||||||||||||||| |||||| |||||    
T  30734483 cttgtgtttctctatctttcacaagcattgtgacattgtgatcggtca 30734436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 51046158 - 51046111
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| ||||||||||||||||| |||||||||| | ||||||    
T  51046158 aatgcttgtgtttctctctctttcacaaacattgtgacattatgattg 51046111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 1261463 - 1261496
Alignment:
Q  36 attggtgtgcagcttttccattgtcttagattaa 69  Q
    ||||||||||||||||| ||||||||||||||||    
T  1261463 attggtgtgcagcttttgcattgtcttagattaa 1261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 45103180 - 45103147
Alignment:
Q  187 tctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||||||||||||||||| ||||||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattg 45103147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 19884717 - 19884749
Alignment:
Q  118 aaaagctacaaaaggtagcttctttattttcac 150  Q
    |||||||||||||| ||||||||||||||||||    
T  19884717 aaaagctacaaaagttagcttctttattttcac 19884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 41753017 - 41753065
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||| |||||||||||||||||||| || |||||||||    
T  41753017 aatgtttgtgtttctttctctttcacaagcattgtggcattgtgattgg 41753065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 55223296 - 55223332
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||||||||||||||||||||| | ||||||    
T  55223296 ttctctctctttcacaagcattgtgacattatgattg 55223332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 7395691 - 7395592
Alignment:
Q  69 agtatgtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgccttggga 168  Q
    |||| ||||||||||   |||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||    
T  7395691 agtacgtgtttgttgcggcggtggaaatagaaaaaaacgccgtttgcacaaaagctacaaatggtagcttctttattttcactttcaaaatgcctcggga 7395592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 16514477 - 16514528
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16514477 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 16514528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 2894016 - 2894063
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  2894016 aatgcttgtatttctctctctttcacaagcattgtgacactgtgattg 2894063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 14229438 - 14229391
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  14229438 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 14229391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2828637 - 2828685
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  2828637 aatgcttgtgtttctctctctttcagaagcattgtgacattgtgattgg 2828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 6722004 - 6722052
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  6722004 aatgcttgtgtttctctctctttcacaaacattgtgacattgtgattgg 6722052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15011333 - 15011381
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  15011333 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgg 15011381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 38933640 - 38933688
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| | |||||||    
T  38933640 aatgcttgtgtttctctctctttcacaagcattgtgacattatgattgg 38933688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 37762086 - 37762035
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||| |||||||||||||||||| |||| ||||||||||||    
T  37762086 aatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtca 37762035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 37961759 - 37961810
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| ||||||||||||||||||||||||| || ||||||||||||    
T  37961759 aatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggtca 37961810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 6217309 - 6217261
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| ||||||||||||||||||||||||| || |||||||||    
T  6217309 aatgtttgtgtttctctctctttcacaagcattgtggcattgtgattgg 6217261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 29508776 - 29508724
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgaca-ctgtgattggtca 224  Q
    |||||||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  29508776 aatgcttgtgtttctctctctttcacaagcattgtggcatttgtgattggtca 29508724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 14470677 - 14470626
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| |||||||||||||||||||||||  ||| ||||||||||||    
T  14470677 aatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtca 14470626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 29925655 - 29925611
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtga 217  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||    
T  29925655 aatgtttgtgtttctctctctttcacaagcattctgacattgtga 29925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 45529506 - 45529605
Alignment:
Q  69 agtatgtgtttgttgtaccggtagaaataggaaaaaatgccgtttgcacaaaagctacaaaaggtagcttctttattttcacgtttaaaatgccttggga 168  Q
    |||| |||||||||||  |||| ||||||| |||||| ||||||||||||||||||| ||| | |||||||||||||||||| || ||||||||| ||||    
T  45529506 agtacgtgtttgttgtggcggtggaaatagaaaaaaacgccgtttgcacaaaagctataaatgttagcttctttattttcactttcaaaatgcctcggga 45529605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 29179682 - 29179628
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtcagtg 227  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  29179682 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcagtg 29179628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 17127649 - 17127598
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  17127649 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 17127598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 48994002 - 48993951
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  48994002 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 48993951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 741587 - 741539
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  741587 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 741539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 32540833 - 32540785
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32540833 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 32540785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 5995422 - 5995473
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  5995422 aatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggtca 5995473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 29371421 - 29371472
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  29371421 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 29371472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 1819573 - 1819527
Alignment:
Q  174 atgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  1819573 atgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 1819527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15220864 - 15220912
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||    
T  15220864 aatgcttgtgtttctctctctttcacaagcattgtgagattgtgattgg 15220912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 37155099 - 37155147
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||||||    
T  37155099 aatgcttgtgtttctctctctttcacaagtattgtgacattgtgattgg 37155147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 46334031 - 46333983
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||||    
T  46334031 aatgcttgtgtttttctctctttcacaagcattgtgacattgtgattgg 46333983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 1091629 - 1091582
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  1091629 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 4609049 - 4609096
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  4609049 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattg 4609096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 34062262 - 34062313
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    ||||||| || ||||||||||||||||| |||||||||| ||||||||||||    
T  34062262 aatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtca 34062313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 45728340 - 45728387
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  45728340 aatgcttgtgtttctctctctttcacaagcattatgacattgtgattg 45728387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 8337936 - 8337889
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| ||||||||||||||||| |||||||||| ||||||||    
T  8337936 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattg 8337889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 9157363 - 9157410
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| ||||||||||||| |||||||||||| | ||||||||    
T  9157363 aatgcttgtgtttctctctctttctcaagcattgtgatattgtgattg 9157410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 28928859 - 28928816
Alignment:
Q  178 ttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||    
T  28928859 ttgtgtttctctctctttcacaagcactgtgacattgtgattgg 28928816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 33219626 - 33219673
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| || ||||||||||||||||||| ||||| ||||||||    
T  33219626 aatgcttgtgtttttctctctttcacaagcattatgacattgtgattg 33219673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 44706869 - 44706834
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtg 208  Q
    |||||||||| |||||||||||||||||||||||||    
T  44706869 aatgcttgtgtttctctctctttcacaagcattgtg 44706834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 47303448 - 47303495
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| ||||||||||||||||| |||||||||| ||||||||    
T  47303448 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattg 47303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 48498468 - 48498519
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| ||||||||||||||||||||| || ||| ||||||||||||    
T  48498468 aatgtttgtgtttctctctctttcacaagcatggtaacattgtgattggtca 48498519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 38674576 - 38674542
Alignment:
Q  187 tctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||||||||||||||||||||||| |||||||||    
T  38674576 tctctctttcacaagcattgtgacattgtgattgg 38674542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 5033214 - 5033265
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  5033214 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 5033265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 33841676 - 33841625
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  33841676 aatgcttgtgtttctctctctttcacaagcattgtgacaatgtgattggtca 33841625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 35441054 - 35441003
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  35441054 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 35441003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 34229693 - 34229741
Alignment:
Q  172 gaatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  34229693 gaatgcttgtgtttctctctctttcacaagcattgtgatattgtgattg 34229741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 8243473 - 8243426
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| ||||||||||||||||||||||||| || ||||||||    
T  8243473 aatgcttgtgtttctctctctttcacaagcattgtggcattgtgattg 8243426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 8796475 - 8796526
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||| ||||||||||||||||||||| | ||||||||||    
T  8796475 aatgcttgtgtttctctatctttcacaagcattgtgacattttgattggtca 8796526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 10086810 - 10086861
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  10086810 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtca 10086861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 34541888 - 34541852
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtga 209  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34541888 aatgcttgtgtttctctctctttcacaagcattgtga 34541852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 6296658 - 6296696
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgaca 211  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  6296658 aatgcttgtgtttctctctctttcacaagtattgtgaca 6296696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 31159915 - 31159952
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||||||||||||||||||||| | |||||||    
T  31159915 ttctctctctttcacaagcattgtgacattatgattgg 31159952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 5667150 - 5667198
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||  |||||||||||||||||||||| ||||| ||| |||||    
T  5667150 aatgcttgtatttctctctctttcacaagcattatgacattgtaattgg 5667198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 35031688 - 35031652
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  35031688 ttctctctctttcacaagcattgcgacattgtgattg 35031652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 3899892 - 3899943
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  3899892 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 3899943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 16971197 - 16971248
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  16971197 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 16971248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2953243 - 2953291
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  2953243 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 2953291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 29699420 - 29699468
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29699420 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 29699468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 16439191 - 16439238
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  16439191 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 16439238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19655211 - 19655259
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  19655211 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgg 19655259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 2094022 - 2093975
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  2094022 aatgcttgtgtttctctctctttcacaagcattatgacattgtgattg 2093975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 38134458 - 38134410
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||| |||||||||| |||||||||||| |||||||||    
T  38134458 aatgcttgtgtttctttctctttcactagcattgtgacattgtgattgg 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 3180145 - 3180098
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| ||||||||||||||||| |||||||||| | ||||||    
T  3180145 aatgcttgtgtttctctctctttcacaaacattgtgacattatgattg 3180098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 30117913 - 30117862
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||||| ||||| || |||||||||| ||||||||||||    
T  30117913 aatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtca 30117862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 16802502 - 16802548
Alignment:
Q  178 ttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    ||||| |||||||||||| ||||||||||||||| | ||||||||||    
T  16802502 ttgtgtttctctctcttttacaagcattgtgacattctgattggtca 16802548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 19598385 - 19598433
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggt 222  Q
    |||||||||| |||||||||||||||||||||| ||||| | ||||||||    
T  19598385 aatgcttgtgtttctctctctttcacaagcatt-tgacattatgattggt 19598433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 28818981 - 28819017
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||||||||||||||||||||| | ||||||    
T  28818981 ttctctctctttcacaagcattgtgacattatgattg 28819017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 7132 - 7084
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  7132 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgg 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 2266 - 2313
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2266 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 2313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 2266 - 2313
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2266 aatgcttgtgtttctctctctttcacaagcattgtgacattgtgattg 2313  T

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Target: scaffold0016 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 49788 - 49737
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  49788 aatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtca 49737  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 11016922 - 11016973
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  11016922 aatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggtca 11016973  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 15027595 - 15027646
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  15027595 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtca 15027646  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4290598 - 4290646
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||||| ||| |||||||||||||||||| ||||||||| |||||||||    
T  4290598 aatgctcgtgtttctctctctttcacaagaattgtgacattgtgattgg 4290646  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 7671996 - 7671948
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| ||||||||||||||||||||||||| || |||||||||    
T  7671996 aatgtttgtgtttctctctctttcacaagcattgtggcattgtgattgg 7671948  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 41018313 - 41018265
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||||| || ||||||||||||||||||||||| |||| |||||||||    
T  41018313 aatgcttatgtttctctctctttcacaagcattgggacattgtgattgg 41018265  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42628348 - 42628396
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||||| || ||||||||||||||||||||||| |||| |||||||||    
T  42628348 aatgcttatgtttctctctctttcacaagcattgggacattgtgattgg 42628396  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 27028878 - 27028831
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattg 220  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||||||||    
T  27028878 aatgtttgtgtttctctctctttcagaagcattgtgacattgtgattg 27028831  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 38975858 - 38975893
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtg 208  Q
    |||||||||| |||||||||||||||||||||||||    
T  38975858 aatgcttgtgtttctctctctttcacaagcattgtg 38975893  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 15568864 - 15568909
Alignment:
Q  125 acaaaaggtagcttctttattttcacgtttaaaatgccttgggacg 170  Q
    |||||||||| |||||||||||||||||| |||| |||| ||||||    
T  15568864 acaaaaggtaacttctttattttcacgttcaaaacgcctcgggacg 15568909  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 29053399 - 29053351
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| ||||||||||||||||||||||| | || |||||||||    
T  29053399 aatgtttgtgtttctctctctttcacaagcattgaggcattgtgattgg 29053351  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 34854780 - 34854732
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||| |||||||||||||||||||| || |||||||||    
T  34854780 aatgtttgtgtttctatctctttcacaagcattgtggcattgtgattgg 34854732  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 48000768 - 48000732
Alignment:
Q  184 ttctctctctttcacaagcattgtgacactgtgattg 220  Q
    ||||||||||||||||||||||||| || ||||||||    
T  48000768 ttctctctctttcacaagcattgtggcattgtgattg 48000732  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 63810 - 63858
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  63810 aatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgg 63858  T

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Target: scaffold0481 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 2972 - 2921
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattggtca 224  Q
    |||| ||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  2972 aatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggtca 2921  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 27305 - 27257
Alignment:
Q  173 aatgcttgtgcttctctctctttcacaagcattgtgacactgtgattgg 221  Q
    ||||||| || |||||||||||||||||| ||| ||||| |||||||||    
T  27305 aatgcttctgtttctctctctttcacaagaattatgacattgtgattgg 27257  T

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