View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12728_low_29 (Length: 223)
Name: NF12728_low_29
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15571248 - 15571045
Alignment:
| Q |
1 |
ataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaacatatcatagcagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15571248 |
ataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaacatatcatagcagtg |
15571149 |
T |
|
| Q |
101 |
taatgtttcatgttctcaaaggaatttgatttttccatagccatttttctttatttatttgtgaagaaactagataggagagttgagcaaataagagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15571148 |
taatgtttcatgttctcaaaggaatttgatttttccatagccatttttctttatttatttgtgaagaaactagataggagagttgagcaaattagagtaa |
15571049 |
T |
|
| Q |
201 |
tatt |
204 |
Q |
| |
|
|||| |
|
|
| T |
15571048 |
tatt |
15571045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 3434880 - 3434964
Alignment:
| Q |
1 |
ataaacgacgaggacatagtggctcattccttggttgagggaaaccttagtgataatgttcataccagcatagccaaattgtaaa |
85 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||| ||||| |||| ||| || || |||||||| || ||||||||||| |||||| |
|
|
| T |
3434880 |
ataaacaacgaggacatagtgactcatccctccattgagagaaagcttggttatgatgttcatgcctgcatagccaaactgtaaa |
3434964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University