View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12728_low_30 (Length: 223)

Name: NF12728_low_30
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12728_low_30
NF12728_low_30
[»] chr4 (12 HSPs)
chr4 (92-213)||(19641501-19641622)
chr4 (98-208)||(9249688-9249799)
chr4 (92-213)||(14655176-14655298)
chr4 (92-213)||(14673621-14673743)
chr4 (92-208)||(14660667-14660784)
chr4 (164-208)||(1641237-1641281)
chr4 (154-197)||(26463198-26463241)
chr4 (159-204)||(15385636-15385681)
chr4 (147-200)||(34195785-34195838)
chr4 (154-197)||(6559156-6559199)
chr4 (147-197)||(9481365-9481415)
chr4 (154-198)||(14727936-14727980)
[»] scaffold0089 (2 HSPs)
scaffold0089 (92-213)||(13385-13507)
scaffold0089 (154-213)||(8451-8510)
[»] chr3 (7 HSPs)
chr3 (92-213)||(8281024-8281145)
chr3 (92-213)||(8309834-8309955)
chr3 (147-197)||(1734931-1734981)
chr3 (159-208)||(28167860-28167909)
chr3 (147-200)||(26683994-26684047)
chr3 (154-200)||(12675442-12675488)
chr3 (175-213)||(15366083-15366121)
[»] chr1 (7 HSPs)
chr1 (92-208)||(18287255-18287371)
chr1 (98-208)||(16214643-16214755)
chr1 (98-208)||(16199628-16199740)
chr1 (92-208)||(18291624-18291741)
chr1 (118-213)||(9187814-9187911)
chr1 (98-133)||(18596488-18596523)
chr1 (92-124)||(36764936-36764968)
[»] scaffold0029 (1 HSPs)
scaffold0029 (92-213)||(6826-6948)
[»] scaffold0001 (1 HSPs)
scaffold0001 (92-208)||(74716-74833)
[»] scaffold0206 (1 HSPs)
scaffold0206 (146-213)||(18831-18898)
[»] chr7 (13 HSPs)
chr7 (154-213)||(14227358-14227417)
chr7 (118-208)||(34192890-34192981)
chr7 (118-208)||(10841156-10841248)
chr7 (118-208)||(34197873-34197964)
chr7 (92-196)||(2967617-2967720)
chr7 (154-197)||(18461391-18461434)
chr7 (155-200)||(23833066-23833111)
chr7 (98-126)||(2148186-2148214)
chr7 (98-126)||(2163397-2163425)
chr7 (98-134)||(4184553-4184589)
chr7 (154-198)||(16456484-16456528)
chr7 (92-124)||(16714583-16714615)
chr7 (92-124)||(17688819-17688851)
[»] chr5 (11 HSPs)
chr5 (153-208)||(20195569-20195624)
chr5 (98-213)||(37648962-37649078)
chr5 (154-197)||(572784-572827)
chr5 (154-197)||(25506174-25506217)
chr5 (155-208)||(30928172-30928225)
chr5 (155-208)||(30955056-30955109)
chr5 (147-200)||(26771748-26771801)
chr5 (147-200)||(27281988-27282041)
chr5 (93-128)||(23724575-23724610)
chr5 (154-198)||(37743645-37743689)
chr5 (154-198)||(37777727-37777771)
[»] chr2 (10 HSPs)
chr2 (107-213)||(17630584-17630691)
chr2 (118-213)||(29441512-29441607)
chr2 (164-213)||(19799760-19799809)
chr2 (92-128)||(28875805-28875841)
chr2 (92-128)||(28891015-28891051)
chr2 (98-133)||(27425927-27425962)
chr2 (98-133)||(27440971-27441006)
chr2 (154-200)||(15707819-15707865)
chr2 (147-196)||(251974-252023)
chr2 (147-196)||(267504-267553)
[»] chr6 (10 HSPs)
chr6 (154-208)||(18819951-18820005)
chr6 (154-208)||(6874506-6874560)
chr6 (118-213)||(16769084-16769177)
chr6 (154-208)||(16560012-16560066)
chr6 (159-208)||(28198972-28199021)
chr6 (155-199)||(22482134-22482178)
chr6 (98-134)||(24374814-24374850)
chr6 (154-200)||(4452291-4452337)
chr6 (154-200)||(28978848-28978894)
chr6 (177-213)||(4114659-4114695)
[»] scaffold0143 (1 HSPs)
scaffold0143 (118-208)||(20957-21049)
[»] scaffold0401 (1 HSPs)
scaffold0401 (154-213)||(15807-15866)
[»] chr8 (5 HSPs)
chr8 (92-200)||(2128668-2128779)
chr8 (146-200)||(2143895-2143949)
chr8 (92-130)||(2143838-2143876)
chr8 (154-200)||(3987392-3987438)
chr8 (118-150)||(29562870-29562902)
[»] scaffold0022 (1 HSPs)
scaffold0022 (118-196)||(155847-155925)
[»] scaffold0045 (1 HSPs)
scaffold0045 (106-198)||(91330-91421)
[»] scaffold0184 (1 HSPs)
scaffold0184 (154-200)||(25805-25851)
[»] scaffold0124 (1 HSPs)
scaffold0124 (92-134)||(27731-27773)
[»] scaffold0078 (1 HSPs)
scaffold0078 (154-200)||(46993-47039)
[»] scaffold0062 (1 HSPs)
scaffold0062 (154-200)||(56731-56777)
[»] scaffold0253 (1 HSPs)
scaffold0253 (175-208)||(934-967)
[»] scaffold0061 (1 HSPs)
scaffold0061 (159-196)||(33820-33857)
[»] scaffold0017 (1 HSPs)
scaffold0017 (159-196)||(164925-164962)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 19641501 - 19641622
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgttgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcca 191  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19641501 gagagcagaaagagaaagttggaaagtgtttgggatgtggcgttgattctgtggctctgactctgacttgtacagtaattgcaccttttataggctgcca 19641600  T
Q  192 agtgtgcttgagacccagtgaa 213  Q
    ||||||||||||||||| ||||    
T  19641601 agtgtgcttgagacccaatgaa 19641622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 9249688 - 9249799
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||     |  ||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  9249688 agaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgatcctgacttgtacagtaaatgcgccttttataggctgccaagtgt 9249787  T
Q  197 gcttgagaccca 208  Q
    ||||||||||||    
T  9249788 gcttgagaccca 9249799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 14655298 - 14655176
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| | ||| ||||||||||||||||    
T  14655298 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaaatgcgccttttataggctgcc 14655199  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  14655198 aagtgtgcttgagacccaatgaa 14655176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 14673743 - 14673621
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| | ||| ||||||||||||||||    
T  14673743 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaaatgcgccttttataggctgcc 14673644  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  14673643 aagtgtgcttgagacccaatgaa 14673621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 14660667 - 14660784
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| | ||| ||||||||||||||||    
T  14660667 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaaatgcgccttttataggctgcc 14660766  T
Q  191 aagtgtgcttgagaccca 208  Q
    ||||||||||||||||||    
T  14660767 aagtgtgcttgagaccca 14660784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 1641281 - 1641237
Alignment:
Q  164 cagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  1641281 cagtgaatgcaccttttataggctgccaagtgtgcttgagaccca 1641237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 26463198 - 26463241
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  26463198 ctgacttgtacagtgattgcaccttttataggctgccatgtgtg 26463241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 15385681 - 15385636
Alignment:
Q  159 ttgtacagtgattgcaccttttataggctgccaagtgtgcttgaga 204  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||    
T  15385681 ttgtgcagtgaatgcaccttttataggctgccaagtgtgctcgaga 15385636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 34195785 - 34195838
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  34195785 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 34195838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 6559156 - 6559199
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||    
T  6559156 ctgacttgtgcagtgaatgcaccttttataggctgccatgtgtg 6559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 9481365 - 9481415
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| |||||    
T  9481365 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgtg 9481415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 14727980 - 14727936
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgc 198  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||    
T  14727980 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgc 14727936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 13385 - 13507
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     || |||||  |||||||||||||| ||||| ||||||||||||||||    
T  13385 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatgggttctgattctgacttgtacagtaattgcgccttttataggctgcc 13484  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  13485 aagtgtgcttgagacccaatgaa 13507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 8510 - 8451
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||    
T  8510 ctgacttgtacagtaattgcgccttttataggctgccaagtgtgcttgagacccaatgaa 8451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 8281024 - 8281145
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||   ||| |||  | |||||||||||||| ||||||||||||||||||||||    
T  8281024 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcatgtgattaa-tggatctccctctgacttgtacagtaattgcaccttttataggctgcc 8281122  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  8281123 aagtgtgcttgagacccaatgaa 8281145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 8309834 - 8309955
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||   ||| |||  | |||||||||||||| ||||||||||||||||||||||    
T  8309834 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcatgtgattaa-tggatctccctctgacttgtacagtaattgcaccttttataggctgcc 8309932  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  8309933 aagtgtgcttgagacccaatgaa 8309955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 1734931 - 1734981
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  1734931 tctggccctgacttgtacagtgattgcaccttttataggctgccatgtgtg 1734981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 28167860 - 28167909
Alignment:
Q  159 ttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||    
T  28167860 ttgtgcagtgaatgcaccttttataggctgtcaagtgtgcttgagaccca 28167909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26684047 - 26683994
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  26684047 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 26683994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 12675442 - 12675488
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  12675442 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 12675488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 15366083 - 15366121
Alignment:
Q  175 ccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  15366083 ccttttataggctgccatgtgtgcttgagacccaatgaa 15366121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 18287371 - 18287255
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||   ||| |||||  |||||||||||||| | ||| ||||||||||||||||    
T  18287371 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgattaa-tggatctgattctgacttgtacagtaaatgcgccttttataggctgcc 18287273  T
Q  191 aagtgtgcttgagaccca 208  Q
    ||||||||||||||||||    
T  18287272 aagtgtgcttgagaccca 18287255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 16214643 - 16214755
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggc--tctgaccctgacttgtacagtgattgcaccttttataggctgccaagt 194  Q
    |||||||||||||||| |||||||||||||||||||| |||| || ||||  |||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  16214643 agaaagagaaagttgggaagtgtttgtgatgtggcgtgtgat-ctatggccctctgattctgacttgtgcagtgaatgcaccttttataggctgccaagt 16214741  T
Q  195 gtgcttgagaccca 208  Q
    ||||||||||||||    
T  16214742 gtgcttgagaccca 16214755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 16199628 - 16199740
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggc--tctgaccctgacttgtacagtgattgcaccttttataggctgccaagt 194  Q
    |||||||||||||||| |||||||||||||||||||| |||| || ||||  |||||  ||||||||| |||||| ||||||||||||||||||||| ||    
T  16199628 agaaagagaaagttgggaagtgtttgtgatgtggcgtgtgat-ctatggccctctgattctgacttgtgcagtgaatgcaccttttataggctgccaggt 16199726  T
Q  195 gtgcttgagaccca 208  Q
    ||||||||||||||    
T  16199727 gtgcttgagaccca 16199740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 18291741 - 18291624
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| | ||| ||||||||||||||||    
T  18291741 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaaatgcgccttttataggctgcc 18291642  T
Q  191 aagtgtgcttgagaccca 208  Q
    ||||||||||||||||||    
T  18291641 aagtgtgcttgagaccca 18291624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 9187814 - 9187911
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctct--gaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||  |||||||||||||  ||  ||||||||| |||||| |||| ||||||||||| |||| ||||| |||| ||||| ||||    
T  9187814 tgtttgtgatgtggcgtgaattctgtggctctctgattctgacttgtgcagtgaatgcagcttttataggccgccatgtgtgattgaaacccaatgaa 9187911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 18596523 - 18596488
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcg 133  Q
    |||||||||||||||| |||||||||||||||||||    
T  18596523 agaaagagaaagttgggaagtgtttgtgatgtggcg 18596488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 36764936 - 36764968
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgt 124  Q
    ||||| |||||||||||||||||||||||||||    
T  36764936 gagagtagaaagagaaagttggaaagtgtttgt 36764968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 6826 - 6948
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgt-gatgtggcgttgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||| || |||||||||||| || ||||||| || |   ||| ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  6826 gagagcagaaagagaaaattagaaagtgtttgttgaggtggcgtggaatgaatggatctgatcctgacttgtatagtaattgcaccttttataggctgcc 6925  T
Q  191 aagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||| ||||    
T  6926 aagtgtgcttgagacccaatgaa 6948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 74716 - 74833
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| | ||| ||||||||||||||||    
T  74716 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaaatgcgccttttataggctgcc 74815  T
Q  191 aagtgtgcttgagaccca 208  Q
    ||||||||||||||||||    
T  74816 aagtgtgcttgagaccca 74833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 18898 - 18831
Alignment:
Q  146 ctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  18898 ctctgatcctgacttgtacagtgattgcaccttttatagggtgccaagtgtgcttgagacccaatgaa 18831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 14227358 - 14227417
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14227358 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccaatgaa 14227417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 34192981 - 34192890
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctctgacc-ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||||||||||||||||  ||| |||||||||  |  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  34192981 tgtttgtgatgtggcgtgtattgtgtggctctctcttctgacttgtgcagtgaatgcaccttttataggctgccaagtgtgcttgagaccca 34192890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 10841156 - 10841248
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtgg--ctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||||| |  ||| |||||  ||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  10841156 tgtttgtgatgtggcttgaattgtgtggatctctgattctgacttgtgcagtgaatgcaccttttataggctgccaagtgtgcttgagaccca 10841248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 34197873 - 34197964
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctctgacc-ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||||||||||||||||  ||| |||||||||  |  ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  34197873 tgtttgtgatgtggcgtgtattgtgtggctctctcttctgacttgtgcaatgaatgcaccttttataggctgccaagtgtgcttgagaccca 34197964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 2967720 - 2967617
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgcc 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||   ||| |||    |||||||||||||| | ||| ||||||||||||||||    
T  2967720 gagagcagaaagagaaagttggaaagtgtttgtgatgtggcgtgtgatt-aatggatct-cttctgacttgtacagtaaatgcgccttttataggctgcc 2967623  T
Q  191 aagtgt 196  Q
    ||||||    
T  2967622 aagtgt 2967617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 18461391 - 18461434
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  18461391 ctgacttgtacagtgattgcaccttttataggctgccatgtgtg 18461434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 23833066 - 23833111
Alignment:
Q  155 tgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  23833066 tgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 23833111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 2148214 - 2148186
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtga 126  Q
    |||||||||||||||||||||||||||||    
T  2148214 agaaagagaaagttggaaagtgtttgtga 2148186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 2163425 - 2163397
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtga 126  Q
    |||||||||||||||||||||||||||||    
T  2163425 agaaagagaaagttggaaagtgtttgtga 2163397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 4184589 - 4184553
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcgt 134  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4184589 agaaagagaaaattgggaagtgtttgtgatgtggcgt 4184553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 16456484 - 16456528
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgc 198  Q
    ||||||||| || ||| || |||||||||||||||||||||||||    
T  16456484 ctgacttgtgcattgaatggaccttttataggctgccaagtgtgc 16456528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 16714615 - 16714583
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgt 124  Q
    ||||| |||||||||||||||||||||||||||    
T  16714615 gagagtagaaagagaaagttggaaagtgtttgt 16714583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 17688851 - 17688819
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgt 124  Q
    ||||| |||||||||||||||||||||||||||    
T  17688851 gagagtagaaagagaaagttggaaagtgtttgt 17688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 20195569 - 20195624
Alignment:
Q  153 cctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20195569 cctgacttgtacagtaattgcaccttttataggctgccaagtgtgcttgagaccca 20195624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 37649078 - 37648962
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgt-gatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtg 195  Q
    ||||||||||| ||||||||||||||| || ||||||| |||||   ||| ||| |  |||||||||||||| |||||||||||||||||||||||||||    
T  37649078 agaaagagaaaattggaaagtgtttgttgaggtggcgtgtgattaa-tggatcttattctgacttgtacagtaattgcaccttttataggctgccaagtg 37648980  T
Q  196 tgcttgagacccagtgaa 213  Q
    |||| |||||||| ||||    
T  37648979 tgctcgagacccaatgaa 37648962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 572784 - 572827
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  572784 ctgacttgtacagtgattgcaccttttataggctgccatgtgtg 572827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 25506174 - 25506217
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtg 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  25506174 ctgacttgtacagtgattgcaccttttataggctgccatgtgtg 25506217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 30928225 - 30928172
Alignment:
Q  155 tgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||| | ||| |||||||||||||||||||||||| |||||||||    
T  30928225 tgacttgtacagtaaatgcgccttttataggctgccaagtgtgcctgagaccca 30928172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 30955109 - 30955056
Alignment:
Q  155 tgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||| | ||| |||||||||||||||||||||||| |||||||||    
T  30955109 tgacttgtacagtaaatgcgccttttataggctgccaagtgtgcctgagaccca 30955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26771801 - 26771748
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  26771801 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 26771748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 27282041 - 27281988
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  27282041 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 27281988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 23724575 - 23724610
Alignment:
Q  93 agagaagaaagagaaagttggaaagtgtttgtgatg 128  Q
    |||| |||||||||||||||||||||||||||||||    
T  23724575 agagcagaaagagaaagttggaaagtgtttgtgatg 23724610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 37743645 - 37743689
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgc 198  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||    
T  37743645 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgc 37743689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 37777727 - 37777771
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgc 198  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||    
T  37777727 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgc 37777771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 17630691 - 17630584
Alignment:
Q  107 aagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagac 205  Q
    |||||||||||||||||||||||||||| ||||     |  |||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17630691 aagttggaaagtgtttgtgatgtggcgtgtgatgaatggattctgattctgacttgtacagtaattgcgccttttataggctgccaagtgtgcttgagac 17630592  T
Q  206 ccagtgaa 213  Q
    ||| ||||    
T  17630591 ccaatgaa 17630584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 29441512 - 29441607
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||||  ||| ||||| |||||  ||||||||| |||||| |||||||||||||||| | || ||||| |||| ||||| ||||    
T  29441512 tgtttgtgatgtggcgtgaattgtgtggatctgattctgacttgtgcagtgaatgcaccttttataggccgtcatgtgtgattgaaacccaatgaa 29441607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 19799809 - 19799760
Alignment:
Q  164 cagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  19799809 cagtgaatgcaccttttataggctgccaagtgtgcttgaaacccaatgaa 19799760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 28875841 - 28875805
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28875841 gagagcagaaagagaaagttggaaagtgtttgtgatg 28875805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 28891051 - 28891015
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatg 128  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28891051 gagagcagaaagagaaagttggaaagtgtttgtgatg 28891015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 27425927 - 27425962
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcg 133  Q
    |||||||||||||||| |||||||||||||||||||    
T  27425927 agaaagagaaagttgggaagtgtttgtgatgtggcg 27425962  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 27440971 - 27441006
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcg 133  Q
    |||||||||||||||| |||||||||||||||||||    
T  27440971 agaaagagaaagttgggaagtgtttgtgatgtggcg 27441006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 15707819 - 15707865
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  15707819 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 15707865  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 251974 - 252023
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||    
T  251974 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgt 252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 267504 - 267553
Alignment:
Q  147 tctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||| ||||    
T  267504 tctgatcctgacttgtacagtaaatgcgccttttataggctgccatgtgt 267553  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 18819951 - 18820005
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18819951 ctgacttgtacagtaattgcaccttttataggctgccaagtgtgcttgagaccca 18820005  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 6874560 - 6874506
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  6874560 ctgacttgtgcagtgaatgcaccttttataggctgccaagtgtacttgagaccca 6874506  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 16769084 - 16769177
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||||||||||||  ||||||||||| |||  |  ||||||||||||||| ||| ||||||||||||||||| ||||| |||| ||||| ||||    
T  16769084 tgtttgtgatgtggcaatgattctgtggatct--ctttgacttgtacagtgaatgcgccttttataggctgccatgtgtgattgaaacccaatgaa 16769177  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 16560066 - 16560012
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||    
T  16560066 ctgacttgtgcagtgaatgctccttttataggctgccatgtgtgcttgagaccca 16560012  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 28198972 - 28199021
Alignment:
Q  159 ttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||||    
T  28198972 ttgtgcagtgaatgcaccttttataggctgctaagtgtgcttgagaccca 28199021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 22482134 - 22482178
Alignment:
Q  155 tgacttgtacagtgattgcaccttttataggctgccaagtgtgct 199  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||    
T  22482134 tgacttgtgcagtgaatgcaccttttataagctgccaagtgtgct 22482178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 24374850 - 24374814
Alignment:
Q  98 agaaagagaaagttggaaagtgtttgtgatgtggcgt 134  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24374850 agaaagagaaagttgggaagtgtttgtgatgtggcgt 24374814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 4452337 - 4452291
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  4452337 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 4452291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 28978848 - 28978894
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  28978848 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 28978894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 4114659 - 4114695
Alignment:
Q  177 ttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  4114659 ttttataagctgccaagtgtgcttgagacccaatgaa 4114695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 21049 - 20957
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtgg--ctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||||| |  ||| |||||  ||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  21049 tgtttgtgatgtggcttgaattgtgtggatctctgattctgacttgtgcagtgaatgcaccttttataggctgccaagtgtgcttgagaccca 20957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 15807 - 15866
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgcttgagacccagtgaa 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  15807 ctgacttgaacagtgattgcaccttttataggctgccaagtgtgcttgagagccaatgaa 15866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 2128668 - 2128779
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt-tgattctgtgg---ctctgaccctgacttgtacagtgattgcaccttttataggct 187  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||| |   |||   ||||||| |||||||||||||| | ||| |||||||||||||    
T  2128668 gagagcagaaagagaaagtgggaaagtgtttgtgatgtggcgtgtga-tgaatggattctctgactctgacttgtacagtaaatgcgccttttataggct 2128766  T
Q  188 gccaagtgtgctt 200  Q
    |||| ||||||||    
T  2128767 gccatgtgtgctt 2128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 2143895 - 2143949
Alignment:
Q  146 ctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    ||||||| |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  2143895 ctctgactctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 2143949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 2143838 - 2143876
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtg 130  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  2143838 gagagcagaaagagaaagtgggaaagtgtttgtgatgtg 2143876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 3987438 - 3987392
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  3987438 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 3987392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 29562870 - 29562902
Alignment:
Q  118 tgtttgtgatgtggcgttgattctgtggctctg 150  Q
    |||||||||||||||||| ||||||||||||||    
T  29562870 tgtttgtgatgtggcgttcattctgtggctctg 29562902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 155847 - 155925
Alignment:
Q  118 tgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||||||||||||||| |||||   ||||||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  155847 tgtttgtgatgtggcgtgtgattaa-tggctctgatcctgacttgtacagtaaatgcgccttttataggctgccaagtgt 155925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 91421 - 91330
Alignment:
Q  106 aaagttggaaagtgtttgtgatgtggcgt-tgattctgtggctctgaccctgacttgtacagtgattgcaccttttataggctgccaagtgtgc 198  Q
    ||||||||||||||||||||||||||||| ||||| | ||  |||||   ||||||||||||| | ||| ||||||||||||||||| ||||||    
T  91421 aaagttggaaagtgtttgtgatgtggcgtgtgattat-tgcttctga-tttgacttgtacagtaaatgcgccttttataggctgccatgtgtgc 91330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 25805 - 25851
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||  ||||||||||||||||||||||||||    
T  25805 ctgacttgtacagtaaatgtgccttttataggctgccaagtgtgctt 25851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 27773 - 27731
Alignment:
Q  92 gagagaagaaagagaaagttggaaagtgtttgtgatgtggcgt 134  Q
    ||||| |||||||||||||||| |||||||| |||||||||||    
T  27773 gagagtagaaagagaaagttgggaagtgtttatgatgtggcgt 27731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 47039 - 46993
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||  ||||||||||||||||||||||||||    
T  47039 ctgacttgtacagtaaatgtgccttttataggctgccaagtgtgctt 46993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 56731 - 56777
Alignment:
Q  154 ctgacttgtacagtgattgcaccttttataggctgccaagtgtgctt 200  Q
    |||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  56731 ctgacttgtacagtaaatgcgccttttataggctgccatgtgtgctt 56777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 967 - 934
Alignment:
Q  175 ccttttataggctgccaagtgtgcttgagaccca 208  Q
    ||||||||||||||||| ||||||||||||||||    
T  967 ccttttataggctgccatgtgtgcttgagaccca 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 33820 - 33857
Alignment:
Q  159 ttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  33820 ttgtatagtgattgcaccttttataggctgccatgtgt 33857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 164962 - 164925
Alignment:
Q  159 ttgtacagtgattgcaccttttataggctgccaagtgt 196  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  164962 ttgtatagtgattgcaccttttataggctgccatgtgt 164925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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