View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_34 (Length: 216)
Name: NF12728_low_34
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 42862125 - 42862310
Alignment:
| Q |
16 |
aaaggaactacagacaatattggctgataagaaaaccaacacagcatctggaaaacactttgagtccaaaatcaatgaagaatattcaaaaggagtcaac |
115 |
Q |
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| T |
42862125 |
aaaggaactacagacaatattggctgataagaaaaccaacacagcatctggaaaacacattgagtccaaaatcaatgaagaatattcaaaaggagtcaac |
42862224 |
T |
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| Q |
116 |
ctcatgaccaagatgtcgtccattgaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgt |
201 |
Q |
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| T |
42862225 |
ctcatgaccaagatgtcgtccattgaaactgaatatcattctgctctgagtaagaaagcctctctagctgaacattgggcctatgt |
42862310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 27574951 - 27575090
Alignment:
| Q |
57 |
cagcatctggaaaacactttgagtccaaaatcaatgaagaatattcaaaaggagtcaacctcatgaccaagatgtcgtccattgaaactgaatatcattc |
156 |
Q |
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| T |
27574951 |
cagcatctggcaaagacattgagtccaaaatcaatgaggaatgtccgaaaggtgcgagtctcatgaccaagatgtcatccgttgaacctgtctatcactt |
27575050 |
T |
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| Q |
157 |
tgctctgagtaagaaagcctctctagctgaacattgggcc |
196 |
Q |
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| T |
27575051 |
tgctcttgccaagaaagcctctttagctgaagattgggcc |
27575090 |
T |
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