View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_6 (Length: 457)
Name: NF12728_low_6
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 34273885 - 34274317
Alignment:
| Q |
16 |
atccggatttggcagcaaactacagaaacaaacatcagtattttggagagagataagcacgtattagaggattggcgttatgcgaacagaactcaatctg |
115 |
Q |
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| T |
34273885 |
atccggatttggcagcaaactacagaaacaaacatcagtattttggagagagcgaagcacgtattagaggattggcgttatgcgaacagaactcaatctg |
34273984 |
T |
|
| Q |
116 |
cacacaggagcaacaatagcatgtaaatggtaca--------gcagaacaaagaaggcgaaaacgggcaagttggaggttaaaatgttatgttgatgatt |
207 |
Q |
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| T |
34273985 |
tacacaggagcaacaatagcatgtaaatggtacaacagaacagcagaacaaagaaggcgaaaacgggcaagttggaggttaaaatgttatgttgatgatt |
34274084 |
T |
|
| Q |
208 |
ccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactctcttatg |
307 |
Q |
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| T |
34274085 |
ccttctcaacatcccgcaatagagctgggatagatatgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactcccttatg |
34274184 |
T |
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| Q |
308 |
ttatgtgaaagttggcgaagctttgggaccatatcacactatgttgtggattaatgacatacaattaacaaatgtcgacatcgaagtggactcaaaggaa |
407 |
Q |
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| T |
34274185 |
ttctgtgaaagttggcgaagctttgggaccatatcacactatgttgtggattaatgacatacaattaacgaatgtcaacatcgaagtggactcaaaggaa |
34274284 |
T |
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| Q |
408 |
gtcattgattattatgttaggaatagaggtgat |
440 |
Q |
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| T |
34274285 |
gtcattgattattatgttaggaatagaggtgat |
34274317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 181 - 334
Target Start/End: Complemental strand, 5299278 - 5299125
Alignment:
| Q |
181 |
ggaggttaaaatgttatgttgatgattccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagatgaggaagaatggtatgtgctgtc |
280 |
Q |
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||||| |||||||| || |||||| || ||||||||||||| | ||||||| |||||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
5299278 |
ggaggctaaaatgtaatattgatgcgtcattctcaacatccctcgatagagtagggataggtatgtgtatttgagatgaggaagggtgttatgtgctgtc |
5299179 |
T |
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| Q |
281 |
caaaactctacggattactctcttatgttatgtgaaagttggcgaagctttggg |
334 |
Q |
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| T |
5299178 |
taaaattctatggattacacccttatgctcggtggaagttggcgaagctttggg |
5299125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 440
Target Start/End: Complemental strand, 8860479 - 8860280
Alignment:
| Q |
241 |
gtatgtgtattcgagatgaggaagaatggtatgtgctgtccaaaactctacggattactctcttatgttatgtgaaagttggcgaagctttgggaccata |
340 |
Q |
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|||||||||||||||||| ||||| || |||||| |||| ||||||||| || |||| || ||||| || ||| ||||||||||||||||||| ||| |
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| T |
8860479 |
gtatgtgtattcgagatgtggaagggtgttatgtgttgtctaaaactctatggcttacacttttatgctacgtggaagttggcgaagctttggggttata |
8860380 |
T |
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| Q |
341 |
tcacactatgttgtggattaatgacatacaattaacaaatgtcgacatcgaagtggactcaaaggaagtcattgattattatgttaggaatagaggtgat |
440 |
Q |
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| T |
8860379 |
tcaggctatgaagtggatcaatgagctagaattagcgaatattgattttgaagtggactggaagaaagtcgttgattattatgcaaggaatagaggtgat |
8860280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 8860563 - 8860495
Alignment:
| Q |
189 |
aaatgttatgttgatgattccttctcaacatcccgcaatagagttgggataggtatgtgtattcgagat |
257 |
Q |
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| T |
8860563 |
aaatgtaatgttgatgtgtcattctcaacatccatcaatagagtagggataagtatgtgtattcgagat |
8860495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 8860775 - 8860693
Alignment:
| Q |
29 |
agcaaactacagaaacaaacatcagtattttggagagagataagcacgtattagaggattggcgttatgcgaacagaactcaa |
111 |
Q |
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| T |
8860775 |
agcaaactacaaaaacgaacagcagcattctggagcgcgaaaagcacttattagaggattgctgtgatgcgaacagacctcaa |
8860693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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