View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_7 (Length: 454)
Name: NF12728_low_7
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 3059780 - 3059345
Alignment:
| Q |
18 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcaacgggtttgatctctgaaaacagttctggtttgctagtcatgtgttgtgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059780 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggtttgatctctgaaaacagttctggtttgctagtcatgtgttgtgtg |
3059681 |
T |
|
| Q |
118 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagtcacatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3059680 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagttacatttg |
3059581 |
T |
|
| Q |
218 |
ccttttgagaagaatgattttgt---------tgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
308 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059580 |
ccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
3059481 |
T |
|
| Q |
309 |
tggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttgttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059480 |
tggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
3059381 |
T |
|
| Q |
409 |
ccagaatgctttccaacaaatttcttttcacctttg |
444 |
Q |
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| T |
3059380 |
ccagagtgctctccaacaaatttcttttcacctttg |
3059345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 17442420 - 17442855
Alignment:
| Q |
18 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcaacgggtttgatctctgaaaacagttctggtttgctagtcatgtgttgtgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442420 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggtttgatctctgaaaacagttctggtttgctagtcatgtgttgtgtg |
17442519 |
T |
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| Q |
118 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagtcacatttg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17442520 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagttacatttg |
17442619 |
T |
|
| Q |
218 |
ccttttgagaagaatgattttgt---------tgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
308 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442620 |
ccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
17442719 |
T |
|
| Q |
309 |
tggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttgttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442720 |
tggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
17442819 |
T |
|
| Q |
409 |
ccagaatgctttccaacaaatttcttttcacctttg |
444 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |
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| T |
17442820 |
ccagagtgctctccaacaaatttcttttcacctttg |
17442855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 4874423 - 4873988
Alignment:
| Q |
18 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcaacgggtttgatctctgaaaacagttctggtttgctagtcatgtgttgtgtg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4874423 |
acctgtgatggcaactttctgtccatttccaatctttacagatcctgcagcgggtttgatctctgaaaacagttttggtttgctagtcatgtgttgtgtg |
4874324 |
T |
|
| Q |
118 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagtcacatttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4874323 |
cagccactatcaataaaccatgtgtctccatcctccgaactccttgtagtattggccatgaacaagagttcttcactatcttcaatttcagttacatttg |
4874224 |
T |
|
| Q |
218 |
ccttttgagaagaatgattttgt---------tgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
308 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4874223 |
ccttttgagaagtatgattttgttgattttggtgctgctgtttcagcctacaaaacctctcaatatgcccagttttattgcagtatctacattgaaatgg |
4874124 |
T |
|
| Q |
309 |
tggtggtgtttttcctttgtaccaacaatcactttccttgtggctggttgttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
408 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4874123 |
tggtggtttttttcctttgtaccaacaatcactttccttgtggctggttcttttgcaaattccacattttggaaatctttccttcttctttgtatctttc |
4874024 |
T |
|
| Q |
409 |
ccagaatgctttccaacaaatttcttttcacctttg |
444 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||| |
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| T |
4874023 |
ccagagtgctctccaacaaatttcttttcacctttg |
4873988 |
T |
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