View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_8 (Length: 441)
Name: NF12728_low_8
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_8 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 340666 - 340359
Alignment:
| Q |
20 |
acctatgttcaggaatccaagctctgcttgaggtgtggcctcattgaagtaggtgaggaattctggattttcatagactgtactgcggtaacattggcaa |
119 |
Q |
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| T |
340666 |
acctatgttcaggaatccaagctctgcttgaggcgtggcctcattgaagtaggtgaggaattctggattttcatagactgtactgcggtaacattggcaa |
340567 |
T |
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| Q |
120 |
ctgattttcgaaatgtcttccatgagattacgccatttttcttctcgcggtggtagagggggacgaagggtagcaagtagcaccgctgttgtgtatattt |
219 |
Q |
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| T |
340566 |
ctgattttcgaaatgtcttccatgagattacgccatttttcttctcggggtggtagagggggacgaagggtagcaagtagcaccgctgttgtgtatattt |
340467 |
T |
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| Q |
220 |
caagttgtctaacagatgtttgtggcaaaccaaacttggcctgcaccatctctccctgttcagtagaccgaagggttccctgcaatgatataatttgatg |
319 |
Q |
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| T |
340466 |
caagttgtctaacagatgtttgtggcaaaccaaacttggcctgcaccatctctccctgttcagtagaccgaagggttccctgcaatgatataatttgatg |
340367 |
T |
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| Q |
320 |
cagttttt |
327 |
Q |
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||||||| |
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| T |
340366 |
tagttttt |
340359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 340386 - 340275
Alignment:
| Q |
330 |
tgcattgacataatttgatgtagtttttcggaccgggaatggcattccaaattccaatgta-----------caacttattctatggaaagatgatctat |
418 |
Q |
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| T |
340386 |
tgcaatgatataatttgatgtagtttttcggactgggagtggcgttccaaattccaatgtaaatgttgataacaacttattctatggaaagatgatctat |
340287 |
T |
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| Q |
419 |
aatctagttcat |
430 |
Q |
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| T |
340286 |
aatctagttcat |
340275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 42188410 - 42188694
Alignment:
| Q |
20 |
acctatgttcaggaatccaagctctgcttgaggtgtggcctcattgaagtaggtgaggaattctggattttcatagactgtactgcggtaacattggcaa |
119 |
Q |
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||||||||| ||||| || || ||||||| ||| ||||| |||| |||||| | ||||||||||||||||| |||||| | |||||||||| | |||| |
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| T |
42188410 |
acctatgttgaggaagccgagttctgcttcaggcgtggcttcatggaagtaagaaaggaattctggattttcgtagactacattgcggtaacacttgcaa |
42188509 |
T |
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| Q |
120 |
ctgattttcgaaatgtcttccatgagattacgccatttttcttctcgcggtggtagagggggacgaagggtagcaagtagcaccgctgttgtgtatattt |
219 |
Q |
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| T |
42188510 |
ctgatctctgagatttcttccatgagactacgccaattttcatctcggggtgggagaggtggacgaagggttgcaagtaatactgcagttgtgtatattt |
42188609 |
T |
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| Q |
220 |
caagttgtctaacagatgtttgtggcaaaccaaacttggcctgcaccatctctccctgttcagtagaccgaagggttccctgcaa |
304 |
Q |
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||||||||||||||| | | |||||||| |||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
42188610 |
caagttgtctaacagctatctgtggcaacccaaacttagcctctaccatttctccctgctcagtagaccgaagtgttccctgcaa |
42188694 |
T |
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