View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12728_low_9 (Length: 436)
Name: NF12728_low_9
Description: NF12728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12728_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 43363096 - 43363514
Alignment:
| Q |
19 |
tgtatttgtactcaagattgtggtaatgaatatcatctgaatttaaagtttgaacacctggagatcacctagacttgaacataattttgacgaataatga |
118 |
Q |
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| T |
43363096 |
tgtatttgtactcaagatcgtggtaatgaatatcatctgaatttaaagtttgaacacctggagatcacctagacttgaacataattttgacgaataatga |
43363195 |
T |
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| Q |
119 |
aatgtatatttgaacacatgaaatttgtggataatcatattcaaaatcgtgt----------tatatgaatgataagttgtcacgccttgttattcatta |
208 |
Q |
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| T |
43363196 |
aatgtatatttgaacacatgaaatttgtggataatcatattcaaaatcgtgtttaattgtgttatatgaatgataagttgtcacgccttgttattcatta |
43363295 |
T |
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| Q |
209 |
accaataaatttgatgataaattcttctaaatatgatttttcattttgtattttcaattgtttgtaccaaagcagagaaattgaaaagaaagttgaagaa |
308 |
Q |
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| T |
43363296 |
accaataaatttgatgataaattcttctaaatatcatttttcattttgtattttcaattatttgtaccaaagcagagaaattgaaaagaaagttgaagaa |
43363395 |
T |
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| Q |
309 |
attatggacaatggttcttcaattgtataannnnnnnacatgtacatacaaacacactaca-aagcaatcacattaagatagaacagcattgtatggaat |
407 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
43363396 |
attatggacaatggttcttcaattgtatcatttttttacatgtacatacaaacacactacacaaacaatcacattaagatagaacagcattgtatggaat |
43363495 |
T |
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| Q |
408 |
ggccacttctgctgcccct |
426 |
Q |
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| T |
43363496 |
ggccacttctgctgcccct |
43363514 |
T |
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