View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12729_high_1 (Length: 476)
Name: NF12729_high_1
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12729_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 460
Target Start/End: Original strand, 48893482 - 48893925
Alignment:
| Q |
4 |
aagtctcaccggtttgataaccaattcgattttaaaaacatgactaattagaatcacattaagat-aacaacataagaaacacaagtcatgagacacaac |
102 |
Q |
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| T |
48893482 |
aagtctcaccggtttgataaccaattcgattttaaaaacatgactaattagaatcacattaagattaacaacataagaaacacaagtcatgagacacaac |
48893581 |
T |
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| Q |
103 |
cacagacatttttaaaaaggcccacatcatcatctcaattctcaactactacacagtacactactgataaagataaagattcacaaacaaacaaacacat |
202 |
Q |
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| T |
48893582 |
cacagacatttttaaaaaggcccacatcatcatctcaa-------ctactacacagtacactactgata------aagattcacaaacaaacaaacacat |
48893668 |
T |
|
| Q |
203 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaactcaatccattttgcatcnn |
302 |
Q |
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| T |
48893669 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaacacaatccattttgcatctt |
48893768 |
T |
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| Q |
303 |
nnnnnccttcactttttaactctacaatcactcactatcattatattcttggacatccggtggtagtattgtcatcactgaacatgtg---cgcagagtg |
399 |
Q |
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| T |
48893769 |
tttttccttcactttttaactctacaa----tcactatcattacattattgaacagctgctggtagtattgtcatcactgaacatgtgtgctgcagagtt |
48893864 |
T |
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| Q |
400 |
atcctccgttggataacaagcatttgcataggagtaatttgcaggaatgtagttattataa |
460 |
Q |
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| T |
48893865 |
atcctccgttggataacaagcatttgcataggagtaatttgcaggaatgtagttattataa |
48893925 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 24742663 - 24742716
Alignment:
| Q |
181 |
attcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaa |
234 |
Q |
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| T |
24742663 |
attcacaaacaaacaaacacatctaacatcctaacacaaacctgtcccaccaaa |
24742716 |
T |
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