View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12729_high_2 (Length: 380)
Name: NF12729_high_2
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12729_high_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 380
Target Start/End: Complemental strand, 6146797 - 6146422
Alignment:
| Q |
8 |
atattattctcacatgtgttatgactttctctttgcttatttttgtgat-ggaagcaaattttatcgttataggataccaaatggaagccctttggctcc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6146797 |
atattattctcacatgtgttatgactttctctttgcttatttttgtgattggaagcaaattttatcgttataggataccaaatggaagccctttgactcc |
6146698 |
T |
|
| Q |
107 |
aatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataat |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6146697 |
aatgttgcaagttattgttgcagcaatttctaagagaaagcttccttatccttctaatccaactcaattgtatgaagtttctaaggctgaggggaataat |
6146598 |
T |
|
| Q |
207 |
ggaagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttaaattactattattcaaattg-aaaagnnnnnnnntatgtaggaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
6146597 |
ggaagacttttggctcataccaagaaactcaagtaagtatttcattaatgattttagattactattattcaaattgaaaaaaaaaatatatatgtaggaa |
6146498 |
T |
|
| Q |
306 |
aagacgagtc-ttacaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgtttt |
380 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6146497 |
aagacgagtctttacaatcaaagtttcaattacggacatgatcactggtatttttaaaactagagcgtcttgtttt |
6146422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 191
Target Start/End: Complemental strand, 23693855 - 23693730
Alignment:
| Q |
66 |
ttttatcgttataggataccaaatggaagccctttggctccaatgttgcaagttattgttgctgcaatttctaagagaaagcttccttatccttctaatc |
165 |
Q |
| |
|
||||||||||||||| |||||| ||| || |||||| ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
23693855 |
ttttatcgttatagggtaccaagtgggagtcctttgactccaatgttgcaagttcttgttgctgccttttctaaaaggaagcttccttatccttctaatc |
23693756 |
T |
|
| Q |
166 |
caactcaattgtatgaagtttctaag |
191 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
23693755 |
ctgatcaattgtatgaggtttctaag |
23693730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University