View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12729_high_3 (Length: 362)

Name: NF12729_high_3
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12729_high_3
NF12729_high_3
[»] chr7 (15 HSPs)
chr7 (1-351)||(46973720-46974070)
chr7 (290-337)||(29653639-29653686)
chr7 (284-336)||(41461242-41461294)
chr7 (285-352)||(1569143-1569210)
chr7 (285-344)||(45601611-45601670)
chr7 (292-344)||(12966151-12966203)
chr7 (285-333)||(24549776-24549824)
chr7 (285-344)||(21517468-21517527)
chr7 (285-344)||(28628021-28628080)
chr7 (279-325)||(30144929-30144975)
chr7 (290-344)||(38135306-38135360)
chr7 (285-343)||(43281967-43282025)
chr7 (292-337)||(22174142-22174187)
chr7 (284-337)||(28858187-28858240)
chr7 (285-337)||(30664710-30664762)
[»] chr1 (11 HSPs)
chr1 (284-344)||(8342968-8343028)
chr1 (290-344)||(3818949-3819003)
chr1 (290-344)||(8203227-8203281)
chr1 (290-344)||(19969305-19969359)
chr1 (284-344)||(6025740-6025800)
chr1 (284-344)||(30834064-30834124)
chr1 (285-344)||(40416506-40416565)
chr1 (284-342)||(42501245-42501303)
chr1 (284-325)||(12135861-12135902)
chr1 (284-337)||(12231507-12231560)
chr1 (292-336)||(8796352-8796396)
[»] chr2 (14 HSPs)
chr2 (290-352)||(26784433-26784495)
chr2 (285-344)||(9556457-9556516)
chr2 (293-352)||(38435079-38435138)
chr2 (279-334)||(43832243-43832298)
chr2 (290-344)||(33287556-33287610)
chr2 (290-352)||(33625291-33625357)
chr2 (292-344)||(19235079-19235131)
chr2 (290-338)||(31254429-31254477)
chr2 (291-334)||(23915787-23915830)
chr2 (297-352)||(33504350-33504405)
chr2 (290-328)||(1626346-1626384)
chr2 (290-344)||(12026098-12026152)
chr2 (284-345)||(42092651-42092712)
chr2 (284-328)||(19024329-19024373)
[»] chr8 (14 HSPs)
chr8 (283-344)||(4011218-4011279)
chr8 (285-344)||(35643694-35643753)
chr8 (284-344)||(23023360-23023420)
chr8 (284-344)||(38178347-38178407)
chr8 (285-337)||(39967587-39967639)
chr8 (285-344)||(38391981-38392040)
chr8 (291-337)||(79169-79215)
chr8 (290-352)||(10108940-10109002)
chr8 (290-344)||(16351513-16351567)
chr8 (290-344)||(17491747-17491801)
chr8 (285-330)||(16705896-16705941)
chr8 (292-344)||(9904977-9905029)
chr8 (284-344)||(10079994-10080054)
chr8 (284-343)||(39388918-39388978)
[»] chr3 (9 HSPs)
chr3 (284-337)||(46431766-46431819)
chr3 (290-350)||(2340810-2340870)
chr3 (290-342)||(36820070-36820122)
chr3 (284-344)||(43308697-43308757)
chr3 (285-344)||(19676169-19676228)
chr3 (284-343)||(37598257-37598315)
chr3 (285-344)||(39600769-39600828)
chr3 (290-344)||(11581579-11581633)
chr3 (283-337)||(41452826-41452880)
[»] chr4 (21 HSPs)
chr4 (285-352)||(50680867-50680934)
chr4 (290-344)||(10209171-10209225)
chr4 (294-352)||(37488218-37488276)
chr4 (284-337)||(42639107-42639160)
chr4 (284-337)||(54470349-54470402)
chr4 (284-344)||(47147508-47147568)
chr4 (290-345)||(31961359-31961414)
chr4 (284-335)||(47372795-47372846)
chr4 (290-328)||(7544616-7544654)
chr4 (290-344)||(7682003-7682057)
chr4 (285-335)||(26024938-26024988)
chr4 (290-336)||(42293358-42293404)
chr4 (284-337)||(934518-934571)
chr4 (284-333)||(20047581-20047630)
chr4 (295-344)||(25967359-25967408)
chr4 (285-350)||(28351688-28351753)
chr4 (292-337)||(53517672-53517717)
chr4 (285-325)||(26025007-26025047)
chr4 (290-342)||(34233117-34233169)
chr4 (284-328)||(37042751-37042795)
chr4 (284-328)||(45569096-45569140)
[»] scaffold0018 (1 HSPs)
scaffold0018 (290-344)||(178513-178567)
[»] scaffold0325 (1 HSPs)
scaffold0325 (288-337)||(11939-11988)
[»] chr6 (6 HSPs)
chr6 (284-344)||(33997631-33997691)
chr6 (285-344)||(34593-34652)
chr6 (285-328)||(43140-43183)
chr6 (296-352)||(579545-579601)
chr6 (290-342)||(10617327-10617379)
chr6 (285-337)||(31831947-31831999)
[»] chr5 (11 HSPs)
chr5 (290-344)||(2713079-2713133)
chr5 (290-344)||(10082838-10082892)
chr5 (290-344)||(12576953-12577007)
chr5 (290-344)||(27998576-27998630)
chr5 (283-344)||(2066132-2066193)
chr5 (284-337)||(5303586-5303639)
chr5 (285-337)||(14667913-14667965)
chr5 (284-344)||(14749442-14749502)
chr5 (284-328)||(28186862-28186906)
chr5 (284-344)||(38684615-38684675)
chr5 (285-337)||(43475382-43475433)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 46974070 - 46973720
Alignment:
Q  1 ctataaacaagtgttgtggaagttcctaaatggcactgtcctattcaaccaatgttactgttttggtaaagtatcgtgtaatcatacttgaccactttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46974070 ctataaacaagtgttgtggaagttcctaaatggcactgtcctattcaaccaatgttactgttttggtaaagtatcgtgtaatcatacttgaccactttta 46973971  T
Q  101 ataaaacaccatgatatgagtttatgacaacttgaataaacatacatttaaatgtagcatcaccatttgagaaccaaggtcatgcaagtccgacactatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46973970 ataaaacaccatgatatgagtttatgacaacttgaataaacatacattcaaatgtagcatcaccatttgagaaccaagttcatgcaagtccgacactatt 46973871  T
Q  201 attattattaaatacacaatctgctannnnnnngccaagttaaaatcaagcttgaagaaaactatacgacagcaatcaatccttatcccactcattaatc 300  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46973870 attattattaaatacacaatctgctatttttttgccaagttaaaatcaagcttgaagaaaactatacgacagcaatcaatccttatcccactcattaatc 46973771  T
Q  301 tctagatgtttattaatagtttctcttacagtttttcaaggtctatctctg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46973770 tctagatgtttattaatagtttctcttacagtttttcaaggtctatctctg 46973720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 29653639 - 29653686
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29653639 actcattaatctctagatctttcttaatagtttctcttacagtttttc 29653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 41461294 - 41461242
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagttttt 336  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  41461294 tatccaactcattaatcactagatctttattaatagtttctcttatagttttt 41461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 1569210 - 1569143
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||| |||||||| ||| ||| ||||||    
T  1569210 atccaactcattaatctctagatctttcttaatagttactcttatagtttttctaggactacctctgc 1569143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 45601670 - 45601611
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtct 45601611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 12966203 - 12966151
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  12966203 tcattaatctctaaatatttcttaatagtttctcttatagtttttctaggtct 12966151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 24549776 - 24549824
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtt 333  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||    
T  24549776 atccaactcattaatctctagatctttcttaatagtttctcttatagtt 24549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 21517468 - 21517527
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| ||| ||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  21517468 atccaacttattaatctctaaatattttttaatagtttctcttatagtttttctaggtct 21517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 28628021 - 28628080
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| ||||||||||||||| || |||  ||||||||||||||| |||||||| ||||||    
T  28628021 atccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtct 28628080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 30144975 - 30144929
Alignment:
Q  279 atccttatcccactcattaatctctagatgtttattaatagtttctc 325  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  30144975 atccctatccaactcattaatctctagatctttcttaatagtttctc 30144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 38135306 - 38135360
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||| || ||| |||||||||||||||| | |||||| ||||||    
T  38135306 actcattaatctctaaatcttttttaatagtttctcttatactttttctaggtct 38135360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 343
Target Start/End: Complemental strand, 43282025 - 43281967
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 343  Q
    |||| |||||||||||||||||| ||  ||||| ||||||||||| ||||||| |||||    
T  43282025 atccaactcattaatctctagatcttacttaattgtttctcttacggtttttctaggtc 43281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 22174187 - 22174142
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||||||||||||||| ||| || ||||||||||||| ||||||||    
T  22174187 tcattaatctctagatctttgtttatagtttctcttatagtttttc 22174142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 28858240 - 28858187
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| ||| |||||||||||||| ||| |||||||||| ||||| ||||||||    
T  28858240 tatccaacttattaatctctagatctttcttaatagtttgtcttatagtttttc 28858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 30664762 - 30664710
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||| ||| ||||    
T  30664762 atccaactcattaatctctagatctttcttaatagtttcttttatagtctttc 30664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 8342968 - 8343028
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||    
T  8342968 tatccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggtct 8343028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 3818949 - 3819003
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||||||||||    
T  3818949 actcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtct 3819003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 8203227 - 8203281
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  8203227 actcattaatctctagatcttttttaatagtttctcttatagtttttctaggtct 8203281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 19969305 - 19969359
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  19969305 actcattaatctctagatctttgttaatagtttctcttatagtttttctaggtct 19969359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 6025800 - 6025740
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||||||||| ||| ||| |||| ||||||| |||||||| ||||||    
T  6025800 tatccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtct 6025740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 30834064 - 30834124
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||| || ||||| ||||||    
T  30834064 tatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtct 30834124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 40416565 - 40416506
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| |||||||||||| ||||| ||| |||||||||| ||||| |||||||| ||||||    
T  40416565 atccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtct 40416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 42501303 - 42501245
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 342  Q
    ||||| |||||||||||| ||||| ||| |||||| ||||||||| |||||||| ||||    
T  42501303 tatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggt 42501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 12135902 - 12135861
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctc 325  Q
    ||||| |||||||||||||||||| ||| |||||||||||||    
T  12135902 tatccaactcattaatctctagatttttcttaatagtttctc 12135861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 12231560 - 12231507
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| ||||||||||||| |||| ||| |||||||| ||||||| ||||||||    
T  12231560 tatccaactcattaatctcgagatctttcttaatagtctctcttatagtttttc 12231507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 8796396 - 8796352
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagttttt 336  Q
    |||||||| ||||||| ||| |||||||||||||||| |||||||    
T  8796396 tcattaatatctagatctttcttaatagtttctcttaaagttttt 8796352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 26784433 - 26784495
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| |||||| |||||||    
T  26784433 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttctctgc 26784495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 9556457 - 9556516
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| ||||||||||| |||||| ||| |||||||||| ||||| |||||||||||||||    
T  9556457 atccaactcattaatcactagatctttcttaatagtttatcttatagtttttcaaggtct 9556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 38435138 - 38435079
Alignment:
Q  293 cattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    ||||||||||||||| ||| |||||||||||||||  |||||||| ||||||| ||||||    
T  38435138 cattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctctgc 38435079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 43832298 - 43832243
Alignment:
Q  279 atccttatcccactcattaatctctagatgtttattaatagtttctcttacagttt 334  Q
    |||||||||| ||||||||||||||||||  || |||||||||||||||| |||||    
T  43832298 atccttatccaactcattaatctctagatccttcttaatagtttctcttatagttt 43832243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 33287610 - 33287556
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||| ||||||    
T  33287610 actcattaatttctagatctttcttaatagtttctcttatagtttttctaggtct 33287556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 33625291 - 33625357
Alignment:
Q  290 actcattaatctctagatgtttattaatag----tttctcttacagtttttcaaggtctatctctgc 352  Q
    |||||||||||||||||| ||| |||||||    |||||||||||||||||| ||||||| ||||||    
T  33625291 actcattaatctctagatatttcttaatagtttctttctcttacagtttttctaggtctacctctgc 33625357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 19235079 - 19235131
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||| ||||||    
T  19235079 tcattaatctctagatctttctcaatagtttctcttatagtttttctaggtct 19235131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 31254477 - 31254429
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttca 338  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||    
T  31254477 actcattaatctctagatctttcttaatagtttaacttacagtttttca 31254429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 23915787 - 23915830
Alignment:
Q  291 ctcattaatctctagatgtttattaatagtttctcttacagttt 334  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||    
T  23915787 ctcattaatctctagatttttcttaatagtttctcttatagttt 23915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 33504405 - 33504350
Alignment:
Q  297 aatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||| | |||||||    
T  33504405 aatctctagatctttcttaatagtttctcttatagtttttctaggtttttctctgc 33504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 1626384 - 1626346
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctctta 328  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  1626384 actcattaatctctagatctttcttaatagtttctctta 1626346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 12026098 - 12026152
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||||||||| ||| ||||||||||||| || ||||| || ||||||    
T  12026098 actcattaatctctagatctttcttaatagtttctcctatagtttctctaggtct 12026152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 42092712 - 42092651
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 345  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||| || |||||||| |||||||    
T  42092712 tatccaactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtcta 42092651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 19024373 - 19024329
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctctta 328  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||||    
T  19024373 tatccaactcattaatctttagatctttcttaatagtttctctta 19024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 4011279 - 4011218
Alignment:
Q  283 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  4011279 ttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtct 4011218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 35643694 - 35643753
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||| |||||||| ||||||    
T  35643694 atccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtct 35643753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 23023420 - 23023360
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  23023420 tatccaactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 23023360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 38178347 - 38178407
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||| ||||| | ||| |||||||||||||||| |||||||| ||||||    
T  38178347 tatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtct 38178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 39967587 - 39967639
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||| ||||||||||| |||||| ||| |||||||||||||||| ||||||||    
T  39967587 atccaactcattaatcgctagatctttcttaatagtttctcttatagtttttc 39967639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 38391981 - 38392040
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| || |||||||| ||||||    
T  38391981 atcccactcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtct 38392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 79215 - 79169
Alignment:
Q  291 ctcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| ||||    
T  79215 ctcattaatctctagatctttcttaatagtttctcttatagtgtttc 79169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 10109002 - 10108940
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    |||| ||||||||||||| ||| ||| ||||||||||||  ||||||| |||||| |||||||    
T  10109002 actcgttaatctctagatctttcttattagtttctcttatggtttttctaggtctttctctgc 10108940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 16351567 - 16351513
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||||||  || |||||||||||||| | |||||||| ||||||    
T  16351567 actcattaatctctagatccttcttaatagtttctctaatagtttttctaggtct 16351513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 17491747 - 17491801
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||| |  | ||| ||||||||||||||||||||||||| ||||||    
T  17491747 actcattaatctccaagtctttcttaatagtttctcttacagtttttctaggtct 17491801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 16705941 - 16705896
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttaca 330  Q
    |||| |||||||||||||||| | ||| ||||||||||||||||||    
T  16705941 atccaactcattaatctctagctttttcttaatagtttctcttaca 16705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 9904977 - 9905029
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||| |||| || |||||||||||||||||||  |||||||| ||||||    
T  9904977 tcattaatttctaaatctttattaatagtttctcttgtagtttttctaggtct 9905029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 10079994 - 10080054
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||||||||| ||| |||| ||||| ||||| ||||| || ||||||    
T  10079994 tatccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtct 10080054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 343
Target Start/End: Complemental strand, 39388978 - 39388918
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctc-ttacagtttttcaaggtc 343  Q
    ||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||| |||||    
T  39388978 tatccaactcattaatctctagatctttcctaatagtttctctttatagtttttctaggtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 46431766 - 46431819
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  46431766 tatccaactcattaatctctagatcttttttaatagtttctcttatagtttttc 46431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 2340810 - 2340870
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctct 350  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||| | |||||| |||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctttctct 2340870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 36820070 - 36820122
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 342  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  36820070 actcattaatctctagatctttcttaatagtttctcttatagtttttctaggt 36820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 43308757 - 43308697
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| ||| |||||||||||||| ||| |||||||||||||||  |||||||| ||||||    
T  43308757 tatccaactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggtct 43308697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 19676169 - 19676228
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| ||||||||| ||||| || |||  |||||||||||||||||||||||| ||||||    
T  19676169 atccaactcattaacctctaaatttttcctaatagtttctcttacagtttttctaggtct 19676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 37598257 - 37598315
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 343  Q
    ||||| |||||||||||||||||| | | |||||||||||||||| |||||||| |||||    
T  37598257 tatccaactcattaatctctagatatatcttaatagtttctctta-agtttttctaggtc 37598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 39600769 - 39600828
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| ||||||||| ||||| || ||| |||||||||||||||| |||||||| ||||||    
T  39600769 atccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtct 39600828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 11581633 - 11581579
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||| |||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  11581633 actcatttatctatagatctttcttaatagtttctcttatagtttttctaggtct 11581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 41452826 - 41452880
Alignment:
Q  283 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||||| |||||||||||||||||| ||| ||||||||||  |||| ||||||||    
T  41452826 ttatccaactcattaatctctagatctttcttaatagtttaacttatagtttttc 41452880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 50680934 - 50680867
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    |||| |||||||||||||||||| ||| | |||| ||||||||| |||||||| ||||||| ||||||    
T  50680934 atccaactcattaatctctagatctttctaaataatttctcttatagtttttctaggtctacctctgc 50680867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 10209225 - 10209171
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||| ||||||    
T  10209225 actcattaatctctagatccttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 37488276 - 37488218
Alignment:
Q  294 attaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| ||||||| ||||||    
T  37488276 attaatttctagatctttcttaatagtttctcttatagtttttctaggtctacctctgc 37488218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 42639107 - 42639160
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  42639107 tatccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttc 42639160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 54470402 - 54470349
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||| ||||||||    
T  54470402 tatccaactcattaatctctagaactttattaatagattctcttatagtttttc 54470349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 47147568 - 47147508
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||||||||||||||||| ||| ||||||||||||  || |||||||| ||||||    
T  47147568 tatccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtct 47147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 31961359 - 31961414
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 345  Q
    ||||||| |||||||||| |||  ||||||||||||||| |||||||| |||||||    
T  31961359 actcatttatctctagatctttcctaatagtttctcttatagtttttctaggtcta 31961414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 47372846 - 47372795
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttt 335  Q
    ||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||    
T  47372846 tatccaactcattaatctctggatctttattagtagtttctcttatagtttt 47372795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 7544616 - 7544654
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctctta 328  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  7544616 actcattaatctctagatctttcttaatagtttctctta 7544654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 7682003 - 7682057
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||| ||||| ||| || ||||||||||||| |||||||| ||||||    
T  7682003 actcattaatctatagatttttcttgatagtttctcttatagtttttccaggtct 7682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 26024938 - 26024988
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttt 335  Q
    |||| |||||||||||||||||| ||| ||||||||||||| || ||||||    
T  26024938 atccaactcattaatctctagatctttcttaatagtttctcatatagtttt 26024988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 42293358 - 42293404
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagttttt 336  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||    
T  42293358 actcattaatttctagatctttcttaatagtttctcttatagttttt 42293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 934518 - 934571
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| |||||||||||||||||  ||| |||||||||||||| | ||||||||    
T  934518 tatccaactcattaatctctagaactttcttaatagtttctctaatagtttttc 934571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 20047630 - 20047581
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtt 333  Q
    ||||| |||||||||||||||||| ||  |||||||||||||||| ||||    
T  20047630 tatccaactcattaatctctagatcttctttaatagtttctcttatagtt 20047581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25967359 - 25967408
Alignment:
Q  295 ttaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||| ||| |||||||||||||||| |||| ||||| ||||    
T  25967359 ttaatctctagatcttttttaatagtttctcttatagttattcaaagtct 25967408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 28351753 - 28351688
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctct 350  Q
    |||| ||||| ||||||||| || |||  ||||||||||||||| |||||||| |||||| |||||    
T  28351753 atccaactcaataatctctaaatctttcgtaatagtttctcttatagtttttctaggtctttctct 28351688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 53517717 - 53517672
Alignment:
Q  292 tcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||||||||||||| | ||| || ||||||||||||||||||||||    
T  53517717 tcattaatctctagttcttttttgatagtttctcttacagtttttc 53517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 26025007 - 26025047
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctc 325  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  26025007 atccaactcattaatctctagatctttcttaatagtttctc 26025047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 34233117 - 34233169
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 342  Q
    |||||||||||||||| | ||||| |||||||||||| | |||||||| ||||    
T  34233117 actcattaatctctaggtctttatgaatagtttctctgatagtttttctaggt 34233169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 37042751 - 37042795
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctctta 328  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||||||    
T  37042751 tatccaactcaataatctctagatctttcttaatagtttctctta 37042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 45569096 - 45569140
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctctta 328  Q
    ||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  45569096 tatccaactcattgatctctagatttttcttaatagtttctctta 45569140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 178513 - 178567
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  178513 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtct 178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 11988 - 11939
Alignment:
Q  288 ccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  11988 ccactcattaatctctagatccttcttaatagtttctcttatagtttttc 11939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 33997631 - 33997691
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| ||||||||||||||||   ||| |||||||||||||||| |||||| ||||||||    
T  33997631 tatccaactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtct 33997691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 34593 - 34652
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||| |||||||||||| ||||| ||| ||||| |||||||||| |||||||| ||||||    
T  34593 atccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtct 34652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 43140 - 43183
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctctta 328  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||    
T  43140 atccaactcattactctctagatctttattaatagtttctctta 43183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 579601 - 579545
Alignment:
Q  296 taatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctctgc 352  Q
    |||| |||| || ||| ||||||||||||||||||||||||  |||||| |||||||    
T  579601 taatttctatatctttcttaatagtttctcttacagttttttgaggtctttctctgc 579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 10617327 - 10617379
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 342  Q
    ||||||||||||||||||  || ||||| |||||||||| |||||||| ||||    
T  10617327 actcattaatctctagatccttcttaatggtttctcttatagtttttctaggt 10617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 31831947 - 31831999
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||| ||||| |||||||||||| ||| |||||||||||||| | ||||||||    
T  31831947 atccaactcagtaatctctagatctttcttaatagtttctctgatagtttttc 31831999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 2713133 - 2713079
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||| ||||||||||  || |||||||||||||||| |||||||| ||||||    
T  2713133 actcattcatctctagatccttcttaatagtttctcttatagtttttctaggtct 2713079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 10082838 - 10082892
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||||||||||||||||  || ||| |||||||||||| |||||||| ||||||    
T  10082838 actcattaatctctagatccttgttactagtttctcttatagtttttctaggtct 10082892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 12576953 - 12577007
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||||||||| ||| |||||||||| ||||  |||||||| ||||||    
T  12576953 actcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtct 12577007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 27998630 - 27998576
Alignment:
Q  290 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  27998630 actcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 27998576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 2066193 - 2066132
Alignment:
Q  283 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    |||||| |||||||||||||||||| ||| ||| |||||||| ||| | |||||| ||||||    
T  2066193 ttatccaactcattaatctctagatcttttttagtagtttcttttataatttttctaggtct 2066132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 5303639 - 5303586
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    ||||| ||||||||| ||||| || ||| | |||||||||||||||||||||||    
T  5303639 tatccaactcattaaactctaaatctttttcaatagtttctcttacagtttttc 5303586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 14667965 - 14667913
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||| |||||||||||||||||| ||| ||| ||| |||||||| ||||||||    
T  14667965 atccaactcattaatctctagatctttcttagtagcttctcttatagtttttc 14667913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 14749502 - 14749442
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| |||| |||||||||||||  || || ||||||||||||| |||||||| ||||||    
T  14749502 tatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtct 14749442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 28186862 - 28186906
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctctta 328  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||||    
T  28186862 tatccaactcattaatctctaaatctttcttaatagtttctctta 28186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 38684675 - 38684615
Alignment:
Q  284 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 344  Q
    ||||| ||| |||||||||||||| ||| |||| ||||||||||  |||||||| ||||||    
T  38684675 tatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtct 38684615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 43475433 - 43475382
Alignment:
Q  285 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 337  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  43475433 atccaactcattaatctctggatctttcttaatagtttctctta-agtttttc 43475382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University