View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12729_high_5 (Length: 319)

Name: NF12729_high_5
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12729_high_5
NF12729_high_5
[»] chr6 (5 HSPs)
chr6 (1-319)||(377395-377713)
chr6 (1-315)||(346789-347103)
chr6 (1-315)||(355448-355762)
chr6 (19-316)||(337644-337941)
chr6 (19-316)||(341682-341979)
[»] chr4 (1 HSPs)
chr4 (15-223)||(3321568-3321776)
[»] chr7 (3 HSPs)
chr7 (15-142)||(12164236-12164363)
chr7 (15-142)||(12175761-12175888)
chr7 (101-142)||(1033930-1033971)
[»] chr1 (10 HSPs)
chr1 (96-310)||(12963809-12964023)
chr1 (101-166)||(13895938-13896003)
chr1 (87-142)||(13080967-13081022)
chr1 (90-172)||(13094437-13094519)
chr1 (90-172)||(13129866-13129948)
chr1 (101-166)||(13888701-13888766)
chr1 (246-310)||(19279102-19279166)
chr1 (87-142)||(30368210-30368265)
chr1 (96-194)||(13065263-13065361)
chr1 (96-172)||(13271630-13271706)
[»] chr8 (1 HSPs)
chr8 (15-224)||(36668088-36668297)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 377713 - 377395
Alignment:
Q  1 gaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  377713 gaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatat 377614  T
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  377613 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaata 377514  T
Q  201 atatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  377513 atatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagat 377414  T
Q  301 aaactagcttcttcacttc 319  Q
    |||||||||||||||||||    
T  377413 aaactagcttcttcacttc 377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 346789 - 347103
Alignment:
Q  1 gaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatat 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||||  ||||| ||||| |||  |||||||||||  ||||||||||||||    
T  346789 gaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatat 346888  T
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaata 200  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||||| |    
T  346889 ccatctctctggcttgaactccaaacaatcttttccccatatctcttcaaatctccccattgaatacaagaaaaatagtattattgtattaggattaaca 346988  T
Q  201 atatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagat 300  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  346989 atatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagat 347088  T
Q  301 aaactagcttcttca 315  Q
    |||||||||| ||||    
T  347089 aaactagctttttca 347103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 355448 - 355762
Alignment:
Q  1 gaatgaaggacaagtcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatat 100  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||||  ||||| ||||| |||  |||||||||||  ||||||||||||||    
T  355448 gaatgaaggacaagtcctttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatat 355547  T
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaata 200  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||||| |    
T  355548 ccatctctctggcttgaactccaaacaatcttttccccatatctcttcaaatctccccattgaatacaagaaaaatagtattattgtattaggattaaca 355647  T
Q  201 atatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagat 300  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  355648 atatggccacttggaagtatatcacctttaattgcttgctttctctcaaagggtattggaggaaaaagccttagagcttcacatatagcaccatgaagat 355747  T
Q  301 aaactagcttcttca 315  Q
    |||||||||| ||||    
T  355748 aaactagctttttca 355762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 337941 - 337644
Alignment:
Q  19 ttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaa 118  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||||||||  ||||||||||| ||||| ||||||||||||||    
T  337941 ttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaacaatgcctcctctctcagaaatccacctctctggcttgaa 337842  T
Q  119 ctccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaataatatgaccacttggaagt 218  Q
    ||||||||||||||||||||| || | | ||   || |||||||||||||||||||| ||||  ||  |||| ||   || |  ||||||||||||||||    
T  337841 ctccaagcaatcttctccccaaatatttgcatcccttcccattgaatacaaagaaaaaaataccatcttattcgggaaaacatgatgaccacttggaagt 337742  T
Q  219 acatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcac 316  Q
    | |||  ||| |||||||| ||| | |||||| |||||||| |||||||||||||  |||||||||||||| || ||||||||||| ||||| |||||    
T  337741 atatcggcttcaattgcttgctttctctcaaaaggtataggcggaaaaagccttaacgcctcacatatagcgccgtgaagataaacaagctttttcac 337644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 341979 - 341682
Alignment:
Q  19 ttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaa 118  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||  ||| ||||||||  ||||||||||| ||||| ||||||||||| ||    
T  341979 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 341880  T
Q  119 ctccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaataatatgaccacttggaagt 218  Q
    |||||||||||||| |||||| || | ||||   || ||||||| |||||||||||| ||||| ||  |||| |||| || |  ||||||||||||||||    
T  341879 ctccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatatcatattattcggataaacatgatgaccacttggaagt 341780  T
Q  219 acatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagcttcttcac 316  Q
    | |||   |||||  |||| ||| | |||||| ||||| || |||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||    
T  341779 atatcgggtttaaccgcttcctttctctcaaaaggtattggtggaaaaagccttaatgcctcacatatagcaccatgaagataaacaagctttttcac 341682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 3321776 - 3321568
Alignment:
Q  15 tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggct 114  Q
    ||||| ||||||||| |||||||||||||||| |||  ||  ||||| ||||| ||| ||||||  ||    ||| ||| ||| ||||| |||||||| |    
T  3321776 tccttacccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatccacctctctggtt 3321677  T
Q  115 tgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaataatatgaccacttgg 214  Q
    | ||||||||||||||||||||||| || || |||| ||| || |||||||| | |||| | | ||| ||||||||||  |||||  |||| ||||| ||    
T  3321676 taaactccaagcaatcttctccccaaatttcctcaactcttccaattgaatatagagaatacactatcattgtatttgacttaatcttatgtccactagg 3321577  T
Q  215 aagtacatc 223  Q
    |||||||||    
T  3321576 aagtacatc 3321568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 12164236 - 12164363
Alignment:
Q  15 tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggct 114  Q
    ||||| ||||||||| ||||||||||||||||||||  || |||||| ||||| ||  ||| ||| || |  ||| | | ||| ||||| ||||||||||    
T  12164236 tccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatccctcctttttgagaaatccacctctctggct 12164335  T
Q  115 tgaactccaagcaatcttctccccatat 142  Q
    | || |||||||||||||||||||||||    
T  12164336 taaattccaagcaatcttctccccatat 12164363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 12175761 - 12175888
Alignment:
Q  15 tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggct 114  Q
    ||||| ||||||||| |||||||||||||||| |||  || |||||| ||||| ||  ||||||  || |  ||| ||| ||| ||||| |||||||| |    
T  12175761 tccttacccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaattatccctcctttcttagaaatccacctctctggtt 12175860  T
Q  115 tgaactccaagcaatcttctccccatat 142  Q
    | || | ||| |||||||||||||||||    
T  12175861 taaatttcaaacaatcttctccccatat 12175888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 1033930 - 1033971
Alignment:
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatat 142  Q
    |||||| ||||||||||||||||||||||||| ||| |||||    
T  1033930 ccatctttctggcttgaactccaagcaatcttttcctcatat 1033971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 310
Target Start/End: Complemental strand, 12964023 - 12963809
Alignment:
Q  96 gatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggat 195  Q
    ||||||||||| || ||||| || ||||||||||||||||||||||| | ||| |  || ||||||| |||||||||| |||  |   |||||||||||     
T  12964023 gatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggac 12963924  T
Q  196 taataatatgaccacttggaagtacatcacctttaattgctttcttgcgctcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatg 295  Q
    ||| |   |  ||||| || | || |||   |||||||||   |||| | ||||| |||||||||||| ||||||||| ||| ||||| ||||| |||||    
T  12963923 taacatggtctccactaggtaatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatg 12963824  T
Q  296 aagataaactagctt 310  Q
    ||||||||| |||||    
T  12963823 aagataaacaagctt 12963809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 13895938 - 13896003
Alignment:
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaata 166  Q
    |||||| ||||||||||||||||||||||||| ||||||||| | ||| | ||| |||||||||||    
T  13895938 ccatctttctggcttgaactccaagcaatcttttccccatatgttttccattcttcccattgaata 13896003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 13081022 - 13080967
Alignment:
Q  87 cctctctcagatatccatctctctggcttgaactccaagcaatcttctccccatat 142  Q
    ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||    
T  13081022 cctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccatat 13080967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 13094437 - 13094519
Alignment:
Q  90 ctctcagatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaaga 172  Q
    |||||||||||||||||||| ||||| || |||| ||| |||||||||||||| | ||| |  || ||||| |||||||||||    
T  13094437 ctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaaga 13094519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 13129866 - 13129948
Alignment:
Q  90 ctctcagatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaaga 172  Q
    |||||||||||||||||||| ||||| || |||| ||| |||||||||||||| | ||| |  || ||||| |||||||||||    
T  13129866 ctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaaga 13129948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 13888766 - 13888701
Alignment:
Q  101 ccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaata 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||   ||| | ||| |||||||||||    
T  13888766 ccatctttctggcttgaactccaagcaatcttttccccatatgctttccattcttcccattgaata 13888701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 19279166 - 19279102
Alignment:
Q  246 tcaaagggtataggaggaaaaagccttatagcctcacatatagcaccatgaagataaactagctt 310  Q
    ||||| |||| ||| ||| |||||||||  || ||||||||||| ||||||||||||||||||||    
T  19279166 tcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagctt 19279102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 30368265 - 30368210
Alignment:
Q  87 cctctctcagatatccatctctctggcttgaactccaagcaatcttctccccatat 142  Q
    |||||||| |||| ||||||||| ||||| || |||| ||||||||||||||||||    
T  30368265 cctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatat 30368210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 13065361 - 13065263
Alignment:
Q  96 gatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttgga 194  Q
    |||||||||||||| ||||| || |||| ||| |||||||||||||| |  || |  || ||||||||||||||| |  |||||||  |||||||||||    
T  13065361 gatatccatctctcaggcttaaattccatgcagtcttctccccatattttctccatccttcccattgaatacaaatagtataatatccttgtatttgga 13065263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 13271630 - 13271706
Alignment:
Q  96 gatatccatctctctggcttgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaaga 172  Q
    |||||||||||||| ||||| ||||||||||||||  | |||||||  | ||| | ||| ||||||| |||||||||    
T  13271630 gatatccatctctcaggcttaaactccaagcaatcaccaccccatacatgttccattcttcccattgcatacaaaga 13271706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 36668088 - 36668297
Alignment:
Q  15 tcctttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggct 114  Q
    ||||| ||||||| | |||||||||||||||| |||  || |||||| ||||| ||| ||||||   | |  ||| ||| ||| | ||| |||||||| |    
T  36668088 tccttacccaaacgactccttggtccagcattgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaaacccacctctctggtt 36668187  T
Q  115 tgaactccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatataattgtatttggattaataatatgaccacttgg 214  Q
    | || ||||||||||||||||||||||| || || |  || || ||||| || | |||| | ||||| ||||||||||  ||||| | ||||||||| ||    
T  36668188 taaattccaagcaatcttctccccatatttcctccacccttccaattgagtatagagaatacaatatcattgtatttgacttaatcacatgaccactagg 36668287  T
Q  215 aagtacatca 224  Q
    ||| ||||||    
T  36668288 aagcacatca 36668297  T

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