View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12729_high_6 (Length: 306)

Name: NF12729_high_6
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12729_high_6
NF12729_high_6
[»] chr4 (1 HSPs)
chr4 (13-306)||(46456049-46456343)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 46456343 - 46456049
Alignment:
Q  13 gagagcaaattcaagacctgcgttttccatccgagccacaatattttgatcatttcctgcagtgaggtaagttat-tattatcatattattactatatca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46456343 gagagcaaattcaagacctgcgttttccatccgagccacaatattttgatcatttcctgcagtgaggtaagttatctattatcatattattactatatca 46456244  T
Q  112 aagaataatacatactattttgactctggaccaataggacattcattatctttctttctaattcagtcgcttatgctctgggactatgtggagagcaaaa 211  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46456243 aagaataatacatactattttgactctggaccgataggacattcattatctttctttctaattcagtcgcttatgctctgggactatgtggagagcaaaa 46456144  T
Q  212 aacttattgtgcctgcacacgacaagcttgtatctgcattggcagtatcagatgttactggattggtggcttcagttagtcatgataggactttc 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46456143 aacttattgtgcctgcacacgacaagcttgtatctgcattggcagtgtcagatgttactggattggtggcttcagttagtcatgataggactttc 46456049  T

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