View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12729_low_1 (Length: 204)
Name: NF12729_low_1
Description: NF12729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12729_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 36216894 - 36217069
Alignment:
| Q |
13 |
ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaatt |
112 |
Q |
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| T |
36216894 |
ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaacggatcaaagatactctatcaatt |
36216993 |
T |
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| Q |
113 |
gtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattc |
188 |
Q |
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| T |
36216994 |
gtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattc |
36217069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 35958792 - 35958611
Alignment:
| Q |
7 |
tgctcgttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagatacccta |
106 |
Q |
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| T |
35958792 |
tgctcgttcactgttaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatggtgtgtataaagatctacaagagttcaaagacactctc |
35958693 |
T |
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| Q |
107 |
tcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattc |
188 |
Q |
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| T |
35958692 |
tcaattgtcagtggtgtattgttggatgctgagtgcaagaaggaccaaaagcatggcttgcgtgaatggctgaggcagattc |
35958611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 36220910 - 36221058
Alignment:
| Q |
36 |
cttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtctactgctagatgc |
135 |
Q |
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| T |
36220910 |
cttatgcttttgagcaagcttctcgtgcctaccgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc |
36221009 |
T |
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| Q |
136 |
tgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcag |
184 |
Q |
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| T |
36221010 |
cgaggagaagaagaaccaacaacatgctctgcgtgaatggttgaggcag |
36221058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 35978247 - 35978115
Alignment:
| Q |
7 |
tgctcgttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagatacccta |
106 |
Q |
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| T |
35978247 |
tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc |
35978148 |
T |
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| Q |
107 |
tcaattgtcagaggtctactgctagatgctgag |
139 |
Q |
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| T |
35978147 |
tcaattgtcagtggtgtattgttggatgctgag |
35978115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 35999659 - 35999527
Alignment:
| Q |
7 |
tgctcgttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagatacccta |
106 |
Q |
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| T |
35999659 |
tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc |
35999560 |
T |
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| Q |
107 |
tcaattgtcagaggtctactgctagatgctgag |
139 |
Q |
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| T |
35999559 |
tcaattgtcagtggtgtattgttggatgctgag |
35999527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 35931035 - 35930963
Alignment:
| Q |
13 |
ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctc |
85 |
Q |
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| T |
35931035 |
ttcactattaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatgatgtgtataaagatctc |
35930963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 36226667 - 36226553
Alignment:
| Q |
34 |
ttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtctactgctagat |
133 |
Q |
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| T |
36226667 |
ttcttatgtttgtgaagaagcttctcgagcctatggtgtgtatgaagatctccaacggatcaaagacactttggcaattgttagaggtcttctattggat |
36226568 |
T |
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| Q |
134 |
gctgaggagaagaag |
148 |
Q |
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| T |
36226567 |
gctgagcacaagaag |
36226553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 35982789 - 35982699
Alignment:
| Q |
33 |
cttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtct |
123 |
Q |
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| T |
35982789 |
cttcctatgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgttagaggtct |
35982699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 36004201 - 36004111
Alignment:
| Q |
33 |
cttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtct |
123 |
Q |
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| T |
36004201 |
cttcctatgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgttagaggtct |
36004111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35947573 - 35947504
Alignment:
| Q |
21 |
tagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatg |
90 |
Q |
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| T |
35947573 |
tagggaagtttgtttcttatggttatgaagaaacttctcgtgcctatggtgtgtatgaacatctacaatg |
35947504 |
T |
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