View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_13 (Length: 522)
Name: NF1272_high_13
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 39 - 513
Target Start/End: Original strand, 47372986 - 47373460
Alignment:
| Q |
39 |
catcatcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatggct |
138 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47372986 |
catcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggct |
47373085 |
T |
|
| Q |
139 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaagagattctgat |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47373086 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgat |
47373185 |
T |
|
| Q |
239 |
cctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctccattgttccca |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373186 |
cctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttgctccattgttccca |
47373285 |
T |
|
| Q |
339 |
ttgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttggattcagaaccaatga |
438 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
47373286 |
ttgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttggactcagaaccaaaga |
47373385 |
T |
|
| Q |
439 |
ggaacacttctgttgagggggaagataggtggctgttgtggtttcnnnnnnngatgtgttttgagctatattatt |
513 |
Q |
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| T |
47373386 |
ggaacacttctgctgagggggaagataggtggctgttgtggtttctttttttgatgtgttttgagctatattatt |
47373460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 483
Target Start/End: Complemental strand, 47385942 - 47385499
Alignment:
| Q |
37 |
gacatcatcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacggccatgg |
136 |
Q |
| |
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|||||||||| ||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47385942 |
gacatcatcatcatcaacatcaacatcctcttcttgttc------cgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatgg |
47385849 |
T |
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| Q |
137 |
cttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaagagattctg |
236 |
Q |
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||||||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |||||| ||||||||| ||||||| |||||||||||| |
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| T |
47385848 |
cttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctg |
47385749 |
T |
|
| Q |
237 |
atcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttg---ctccattgt |
333 |
Q |
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||||||| || ||||||||||||||||||||||| || |||| ||||||||||||| ||| ||| || |||||||| |||||| |||||||| |
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| T |
47385748 |
atcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgc |
47385649 |
T |
|
| Q |
334 |
tcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttggattcagaacc |
433 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||||||| ||||| || || |||||||| || || || |||||||| ||||||||| ||| | || |
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| T |
47385648 |
tcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccgtacataattcaaggctctttggactcatagcc |
47385549 |
T |
|
| Q |
434 |
aatgaggaacacttctgttgagggggaagataggtggctgttgtggtttc |
483 |
Q |
| |
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|| ||||||| ||||||||||| | | |||||||| |||||||||||| |
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|
| T |
47385548 |
aaagaggaacgtttctgttgaggatgcacataggtggttgttgtggtttc |
47385499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
139 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacg |
210 |
Q |
| |
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||||||||||||||| || || ||||||||||||||||| | |||||||| |||||||||||||| |||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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