View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_20 (Length: 454)
Name: NF1272_high_20
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 172 - 440
Target Start/End: Complemental strand, 41207128 - 41206847
Alignment:
| Q |
172 |
cctagttacttaatttgagtacctttatctttcacaaattagaaataggcttgcagctgtttatctatttctattttaatgaatgtcttatattaaatat |
271 |
Q |
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| T |
41207128 |
cctagttacttaatttgagtacctttatctttcaaaaattataaataggcttgcagctgtttatctatttctattttaatgaatgtcttatattaaatat |
41207029 |
T |
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| Q |
272 |
gcttgatagttgatataatctaacacatannnnnnnattttaaaaaagccgaaggatataaatgaactat-------------tgtgtctcgaatagaaa |
358 |
Q |
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| T |
41207028 |
gcttgatagttgatataatctaacacatatttttttattttaaaaaagccgaaggatataaatgaactattctatgcgcaaagtgtgtctcgaatagaaa |
41206929 |
T |
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| Q |
359 |
atgacagaaaatcatgatatgccgagaactataagcacaatgcaaacnnnnnnnnncctctgaaataagagctaatgcaaca |
440 |
Q |
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| T |
41206928 |
acgacagaaaatcatgatatgccgagaactataagcacaatgcaaacaaaaaaaaacctctgaaataagagctaatgcaaca |
41206847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 41207277 - 41207173
Alignment:
| Q |
30 |
ggtttttatgtattgaatgaatagaaccactttctttgtttcatatacattttagatgtttcctcttttgcaattacatttaa----accatataaatgt |
125 |
Q |
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| T |
41207277 |
ggtttttatgtattgaatgaatagaaccactttctttgtttcatatacattttagatgtttcctcttttgcaattacatttaaaccaaccatataaatgt |
41207178 |
T |
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| Q |
126 |
cataa |
130 |
Q |
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||||| |
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| T |
41207177 |
cataa |
41207173 |
T |
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