View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_21 (Length: 451)
Name: NF1272_high_21
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 30 - 443
Target Start/End: Complemental strand, 36285653 - 36285239
Alignment:
| Q |
30 |
cgtataccaaggcctggatgaaatggaaagattaatcaacaaatttatgatccatttatatgcataaggatggtagtggagaatgtgagaggagtcgtat |
129 |
Q |
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| T |
36285653 |
cgtataccaaggcctggatgaaatggaaagattaatcaacaaatttatgatccatttatatgcataaggatggtagtggagaatgtgagaggagtcatat |
36285554 |
T |
|
| Q |
130 |
tagcatgcctttaattatgtatacagcttgtttgaattgcatagataactatg-ataatacagcatcattttgaagttgaatgttccaatatcccttaaa |
228 |
Q |
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| T |
36285553 |
tagcatgcctttaattatgtatacagcttgtttgaattgcatagataactatgcataatacagcatcattttgaagttgaatgttccaatatcccttaaa |
36285454 |
T |
|
| Q |
229 |
aataattgaaatatgtaaaatgatccaagcagttagtaattaggatgttatcttgtgataaaatgagtaccaaatattcgccccacattaatatgccaat |
328 |
Q |
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| T |
36285453 |
aataattgaaatatgtaaaatgatccaagcagttagtaattaggatgttatcttgtgataaaatgagtaccaaatattcaccccacattaatatgccaat |
36285354 |
T |
|
| Q |
329 |
acacaagttaaagtatgatatgactcaccagaaacaatagagaaagccgatataaggggaccataaactccactaacaggaatccttgtagtccccttgc |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36285353 |
tcacaagttaaagtatgatatgactcaccagaaacaatagagaaagccgatataaggggaccataaactccactaacaggaatccttgtagtccccttgc |
36285254 |
T |
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| Q |
429 |
cagcccagtataatc |
443 |
Q |
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| T |
36285253 |
cagcccagtataatc |
36285239 |
T |
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