View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1272_high_24 (Length: 432)
Name: NF1272_high_24
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 4398668 - 4399085
Alignment:
| Q |
1 |
tagggtgtgaattattatttttagggaaggttagggtgtgaattgaaaatgtcatttctccgatattgaagagtttatacacaatattagtatttagggt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398668 |
tagggtgtgaattattttttttagggaaggttagggtgtgaattgaaaatgtcatttctcctatattgaagagtttatacacaatattagtatttagggt |
4398767 |
T |
|
| Q |
101 |
taattgttcaaattgttaaattgactctgtaatatacgcaatatatgtagtccaaaaaattannnnnnnnnnnnacctt-caatatacatatagtccaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4398768 |
taattgttcaaattgttaaattgactctgtaatatacgtaatatatgtagtccaaaaaattatttttattttttaccttacaatatacatatagtccaaa |
4398867 |
T |
|
| Q |
200 |
aaaaatgatctaaatgttgaannnnnnncatgatttttccagacatgcttaggatgttaacatatcgctttacataaaatatcacaaacatacacacata |
299 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
|
|
| T |
4398868 |
aaaaatgatctaaatgttgaatttttt-cataatttttccagacatgcttaggatgttaacatatcgctttacataaaatatcacaaa-acatacacata |
4398965 |
T |
|
| Q |
300 |
actataaatcaagtgtttcaaaaatccataatatcatcattggatacaagagatcgttcacttattcatggttatacgttcaaaagactgtaacatatgt |
399 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4398966 |
actataaatcaagtgtttcaaaa-tccataatatcatcattggatacaagagatcgttcacttattcatggttattcgttcaaaagactgtaacatatgt |
4399064 |
T |
|
| Q |
400 |
cttcctccctccgtaagccta |
420 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4399065 |
cttcctccctccgtaagccta |
4399085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University