View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_25 (Length: 428)
Name: NF1272_high_25
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 39 - 419
Target Start/End: Complemental strand, 29024832 - 29024451
Alignment:
| Q |
39 |
attatgaaatttgtgtctcaaatcaccattctttcatttataaatacttac-aagactaatcttgtatcataaaaaatacaatacatcttttttaaacca |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024832 |
attatgaaatttgtgtctcaaatcaccattctttcatttataaatactttctaagactcatcttgtatcataaaaaatacaatacatcttttttaaacca |
29024733 |
T |
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| Q |
138 |
atccattttattttacaggttttaccctagccctagcatgcatgttcacatgccaaatcttcaaaacgacatcaaaataatatgaaccccttaaagacaa |
237 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29024732 |
atccattttattttacaggttttacccttgccctagcatgcatgttcacatgccaaatcttcaaaacgacatcaaaataatatgaaccacttaaagacaa |
29024633 |
T |
|
| Q |
238 |
agtggtcttagttatcataaattcatcaatgttcttatcttatctgtcttcgttgcaaacattgaataatgatataactgtataacaataacaaggcaat |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024632 |
agtggtcttagttatcataaattcatcaatgttcttatcttatctgtcttcgttgcaaacattgaataatgatataactgtataacaataacaaggcaat |
29024533 |
T |
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| Q |
338 |
gaggcatcttatccatcaaggtatccataaattctaaattgcaagttgagactcacatcaatttttaatctataagaataat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29024532 |
gaggcatcttatccatcaaggtatccataaattctaaattgcaagttgagactcacatcaatttttaatctataagaataat |
29024451 |
T |
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