View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_28 (Length: 416)
Name: NF1272_high_28
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 41717090 - 41716703
Alignment:
| Q |
1 |
aaccggggagggacttcagggctaaggccgacaattagtatgcaacaaagaaaaaagtagttcttcaaacaaaactctgtgaactagctgctcactccca |
100 |
Q |
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| T |
41717090 |
aaccggggagggacttcagggctaaggccgacaattagtatgcaacaaagaaaaaagtatttcttcaaacaaaactctgtgaactagctgctcactccca |
41716991 |
T |
|
| Q |
101 |
gataacttctagcattggcgattctgtttccttcctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaatt |
200 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716990 |
gataacttctagcattggcgattctctttcctttctcaatgtgttttttcttggatcgtgatatgcacttcagtctttaatattctaaacttctgaaatt |
41716891 |
T |
|
| Q |
201 |
ttggcttgaaaaccagagagatttttccccttctctctgtttgcacctttgtatttgctatactgctctaaaagatcattttcaccaattattcctccca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716890 |
ttggcttgaaaaccagagagatttttccccttctctctgtttgcacctttgtatttgctatactgctctaaaagatcattttcaccaattattcctccca |
41716791 |
T |
|
| Q |
301 |
tgttctcatcaatccattatcaccccacttcgcgtcaaattatattctgttcaccttggatatctgggaggaaaacttaggtattttt |
388 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716790 |
tgttctcataaatccattatcaccccactttgcgtcaaattatattctgttcaccttggatatctgggaggaaaacttaggtattttt |
41716703 |
T |
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