View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_high_30 (Length: 402)

Name: NF1272_high_30
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_high_30
NF1272_high_30
[»] chr4 (4 HSPs)
chr4 (1-399)||(653739-654136)
chr4 (356-393)||(24490845-24490882)
chr4 (356-398)||(10119806-10119848)
chr4 (306-355)||(12274277-12274326)
[»] chr8 (12 HSPs)
chr8 (307-353)||(26006771-26006817)
chr8 (311-355)||(12030364-12030408)
chr8 (311-355)||(12051482-12051526)
chr8 (354-398)||(13584926-13584970)
chr8 (316-355)||(43234228-43234267)
chr8 (356-398)||(19430784-19430826)
chr8 (356-398)||(19436226-19436268)
chr8 (356-398)||(19566933-19566975)
chr8 (356-398)||(19572375-19572417)
chr8 (356-398)||(31031307-31031349)
chr8 (356-398)||(33616064-33616106)
chr8 (306-351)||(40175141-40175186)
[»] chr2 (4 HSPs)
chr2 (306-355)||(16349454-16349503)
chr2 (306-350)||(18731826-18731870)
chr2 (356-398)||(42915314-42915356)
chr2 (306-355)||(20214300-20214349)
[»] chr5 (4 HSPs)
chr5 (356-399)||(13581981-13582024)
chr5 (354-390)||(7805833-7805869)
chr5 (356-399)||(14374874-14374917)
chr5 (306-355)||(29242101-29242150)
[»] chr3 (5 HSPs)
chr3 (352-398)||(33088612-33088658)
chr3 (356-398)||(13022800-13022842)
chr3 (356-398)||(53120272-53120314)
chr3 (315-350)||(7515094-7515129)
chr3 (356-393)||(3448722-3448759)
[»] chr7 (9 HSPs)
chr7 (304-353)||(34899175-34899224)
chr7 (354-398)||(10437414-10437458)
chr7 (354-398)||(10451124-10451168)
chr7 (356-398)||(9974020-9974062)
chr7 (356-398)||(24529141-24529183)
chr7 (314-355)||(21223039-21223080)
chr7 (356-393)||(33227076-33227113)
chr7 (306-350)||(42885899-42885943)
chr7 (306-354)||(12152783-12152831)
[»] chr1 (10 HSPs)
chr1 (311-355)||(3295284-3295328)
chr1 (354-398)||(31289505-31289549)
chr1 (356-398)||(13891556-13891598)
chr1 (356-398)||(14582499-14582541)
chr1 (356-398)||(26650428-26650470)
chr1 (313-355)||(31592406-31592448)
chr1 (356-398)||(38734877-38734919)
chr1 (356-398)||(39746674-39746716)
chr1 (355-398)||(5602169-5602212)
chr1 (356-399)||(10106792-10106835)
[»] scaffold0132 (2 HSPs)
scaffold0132 (356-398)||(2421-2463)
scaffold0132 (356-398)||(10381-10423)
[»] chr6 (3 HSPs)
chr6 (356-398)||(19478889-19478931)
chr6 (356-393)||(17289607-17289644)
chr6 (306-355)||(13406215-13406264)
[»] scaffold0011 (2 HSPs)
scaffold0011 (356-398)||(2378-2420)
scaffold0011 (356-398)||(7632-7674)
[»] scaffold0279 (1 HSPs)
scaffold0279 (306-355)||(6810-6859)
[»] scaffold0016 (1 HSPs)
scaffold0016 (306-355)||(187223-187272)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 654136 - 653739
Alignment:
Q  1 taacatttaacattcaaatattagaacaaaatgagaaatattcagcgcaggtacaacaaccttacgcgactattaggaaacacttcggtagatcatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  654136 taacatttaacattcaaatattagaacaaaatgagaaatattcagcgcaggtacaacaaccttacgcgactattaggaaacacttcggtagatcatatat 654037  T
Q  101 tagttaaaatttgtgtatttttatgttaagcttggcatannnnnnnctaaagtgaacgttagtctatgcgctgacatggctgtagatagggtcatgacag 200  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  654036 tagttaaaatttgtgtatttttatgttaagcttggcatatttttttctaaagtgaacgttagtctatgcgctgacatggctgtagatagggtcatgacag 653937  T
Q  201 tttctaaagtgaacgttagtctaagcttggcatannnnnnncgcgtgatttaattggatgcatgtatnnnnnnngtttcactgtcggtgtatttaccttt 300  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  653936 tttctaaagtgaacgttagtctaagcttggcatatttttttcgcgtgatttaattggatgcatgtat-aaaaaagtttcactgtcggtgtatttaccttt 653838  T
Q  301 tttaatttacaagagaaaacttaatgcatttcatttaaaataagagtagagatactgttggaacactagtttaatctagtgagaaaattggatgagaat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  653837 tttaatttacaagagaaaacttaatgcatttcatttaaaataagagtagagatactgttggaacactagtttaatctagtgagaaaattggatgagaat 653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 24490882 - 24490845
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggat 393  Q
    |||||||||||||||| |||||||||||||||||||||    
T  24490882 tgttggaacactagttaaatctagtgagaaaattggat 24490845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 10119806 - 10119848
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||    
T  10119806 tgttggaacactagttgaatctcgtgagaaaattggataagaa 10119848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 12274326 - 12274277
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||||| |||||||| ||||||||||| | ||||| |||||||||||    
T  12274326 tttacaagaaaaaacttattgcatttcattcataataatagtagagatac 12274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 26006771 - 26006817
Alignment:
Q  307 ttacaagagaaaacttaatgcatttcatttaaaataagagtagagat 353  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  26006771 ttacaaaagaaaacttaatgcatttcatttaaaataagagtagagat 26006817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 12030408 - 12030364
Alignment:
Q  311 aagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||    
T  12030408 aagagaaaacttaatgcatgtcatttaaaataagagtagtgatac 12030364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 12051526 - 12051482
Alignment:
Q  311 aagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  12051526 aagagaaaacataatgcatttcatttaaaataagagtagtgatac 12051482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 13584970 - 13584926
Alignment:
Q  354 actgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  13584970 actgttggaacactagttaaatctagtgagaaaattggataagaa 13584926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 43234267 - 43234228
Alignment:
Q  316 aaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43234267 aaaacttaatgcatttgatttaaaataagagtagagatac 43234228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19430826 - 19430784
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaa 19430784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19436268 - 19436226
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaa 19436226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19566975 - 19566933
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaa 19566933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19572417 - 19572375
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaa 19572375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 31031349 - 31031307
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| |||||| |||||||||||||| ||||    
T  31031349 tgttggaacactagttaaatctaatgagaaaattggataagaa 31031307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 33616064 - 33616106
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  33616064 tgttggaacattagttaaatctagtgagaaaattggataagaa 33616106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 40175141 - 40175186
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagag 351  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||||    
T  40175141 tttacaagagaaagcctaatgcaattcatttaaagtaagagtagag 40175186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 16349454 - 16349503
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  16349454 tttacaagagaaatcttaatgcatttcatttaaaataagagtatagatac 16349503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 18731870 - 18731826
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtaga 350  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||    
T  18731870 tttacaaaagaaaacttaatgcatttcatttaatataagagtaga 18731826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 42915356 - 42915314
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaa 42915314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 20214349 - 20214300
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||  ||||||| ||||||||||| ||||||| |||||||||||    
T  20214349 tttacaagaagaaacttattgcatttcattcaaaataatagtagagatac 20214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 13581981 - 13582024
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaat 399  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaat 13582024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 7805869 - 7805833
Alignment:
Q  354 actgttggaacactagtttaatctagtgagaaaattg 390  Q
    |||||||||||||||||| ||||||||||||||||||    
T  7805869 actgttggaacactagttcaatctagtgagaaaattg 7805833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 14374917 - 14374874
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaat 399  Q
    |||||||||||||||| |||||||||||||  ||||||||||||    
T  14374917 tgttggaacactagttcaatctagtgagaagtttggatgagaat 14374874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 29242101 - 29242150
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||  ||||||| ||||||||||| ||||||| |||||||||||    
T  29242101 tttacaagaagaaacttattgcatttcattcaaaataatagtagagatac 29242150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 33088612 - 33088658
Alignment:
Q  352 atactgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  33088612 atactgttggaacactagttaaatctagtgagaaaattggataagaa 33088658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 13022842 - 13022800
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaa 13022800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 53120314 - 53120272
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaa 53120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 7515129 - 7515094
Alignment:
Q  315 gaaaacttaatgcatttcatttaaaataagagtaga 350  Q
    |||| |||||||||||||||||||||||||||||||    
T  7515129 gaaaccttaatgcatttcatttaaaataagagtaga 7515094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 3448759 - 3448722
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggat 393  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3448759 tgtttgaacactagttaaatctagtgagaaaattggat 3448722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 34899224 - 34899175
Alignment:
Q  304 aatttacaagagaaaacttaatgcatttcatttaaaataagagtagagat 353  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  34899224 aatttacaggagaaaatttaatgcatttcatttaaaataagagcagagat 34899175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 10437458 - 10437414
Alignment:
Q  354 actgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  10437458 actgttggaacactagttgaatctagtgagaaaattggataagaa 10437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 10451168 - 10451124
Alignment:
Q  354 actgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  10451168 actgttggaacactagttgaatctagtgagaaaattggataagaa 10451124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 9974062 - 9974020
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaa 9974020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 24529183 - 24529141
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaa 24529141  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 21223039 - 21223080
Alignment:
Q  314 agaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  21223039 agaaaacttaatgtatttcatttaaaataagaatagagatac 21223080  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 33227113 - 33227076
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggat 393  Q
    |||||||||||||||| |||||||||||||||||||||    
T  33227113 tgttggaacactagttaaatctagtgagaaaattggat 33227076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 42885943 - 42885899
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtaga 350  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||    
T  42885943 tttacaagagaaaacttaattcatttcatttataataagaataga 42885899  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 12152831 - 12152783
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagata 354  Q
    |||||||||  ||| ||| ||||||||||||||||||| ||||||||||    
T  12152831 tttacaagatgaaatttattgcatttcatttaaaataatagtagagata 12152783  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 3295284 - 3295328
Alignment:
Q  311 aagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  3295284 aagagaaaacttaatgcattttatttaaaacaagagtagagatac 3295328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 31289549 - 31289505
Alignment:
Q  354 actgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  31289549 actgttggaacactagttgaatctagtgagaaaattggataagaa 31289505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 13891598 - 13891556
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaa 13891556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 14582541 - 14582499
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  14582541 tgttggaacactagttaaatctagtgagaaaattggataagaa 14582499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 26650428 - 26650470
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaa 26650470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 31592448 - 31592406
Alignment:
Q  313 gagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  31592448 gagaaaatttaatgcatttcatttaaaaaaagagtagagatac 31592406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 38734919 - 38734877
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaa 38734877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 39746674 - 39746716
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  39746674 tgttggaacactagttgaatctagtgagaaaattggataagaa 39746716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 5602169 - 5602212
Alignment:
Q  355 ctgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||    
T  5602169 ctgttggaacactagttgaatttagtgagaaaattggataagaa 5602212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 10106835 - 10106792
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaat 399  Q
    |||||||||||||||| ||||||||||||||||||  |||||||    
T  10106835 tgttggaacactagttcaatctagtgagaaaattgattgagaat 10106792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 2421 - 2463
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaa 2463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 10381 - 10423
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaa 10423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 19478931 - 19478889
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaa 19478889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 17289607 - 17289644
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggat 393  Q
    |||||||||||||||| |||||||||||||||||||||    
T  17289607 tgttggaacactagttgaatctagtgagaaaattggat 17289644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 13406264 - 13406215
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||  || |||| || ||||||||||||||||||||||||||||    
T  13406264 tttacaagaagaagcttattgtatttcatttaaaataagagtagagatac 13406215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 2420 - 2378
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaa 2378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 7674 - 7632
Alignment:
Q  356 tgttggaacactagtttaatctagtgagaaaattggatgagaa 398  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaa 7632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 6859 - 6810
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||  ||||||| ||||||||||| ||||||| |||||||||||    
T  6859 tttacaagaataaacttattgcatttcattcaaaataatagtagagatac 6810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 187272 - 187223
Alignment:
Q  306 tttacaagagaaaacttaatgcatttcatttaaaataagagtagagatac 355  Q
    |||||||||  ||||||| ||||||||||| ||||||| |||||||||||    
T  187272 tttacaagaagaaacttattgcatttcattcaaaataatagtagagatac 187223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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