View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_43 (Length: 333)
Name: NF1272_high_43
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 304287 - 304597
Alignment:
| Q |
30 |
gaaacatcaatgttgtattattattacaacagaatatcaacccatacatacgtggacaaaggaaatttaagaaacatgacaaca---------------- |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
304287 |
gaaacatcaatgttgtattattattacaacagaatatcaacccatac----gcggacaaaggaaatttaagaaacatgaaaacatttttataagaaaagt |
304382 |
T |
|
| Q |
114 |
acaccatggacatttatgaaacacaaattgaatttctaaagcattgccaattgttggatattaatgggagaagtgtatgattgtgaagtgtatgatgctt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
304383 |
acaccatggacatttatgaaacacaaattgaatttctaaagcattgccaattgttggatattaatgggagaagtgtatgattgtgaactgtatgatgctt |
304482 |
T |
|
| Q |
214 |
tggctagtaaaatgttagccaactcagttgggtggaaagcatcccaaaacaaatatttcccacgatcttcacatacttgttgtaatggaagacaagtgat |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
304483 |
tggctagtaaaatgttggccaactcagttgggtggaaagcatcccaaaacaaatatttcccacgatcttcacatacttgttgtaatggaagacaagtgat |
304582 |
T |
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| Q |
314 |
ttgtcctttgcttct |
328 |
Q |
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|||||| ||| |||| |
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| T |
304583 |
ttgtccattgtttct |
304597 |
T |
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