View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_44 (Length: 328)
Name: NF1272_high_44
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 18224868 - 18225139
Alignment:
| Q |
1 |
aatattttttaaattaccaatatgccc-ccattttcaatgttggtgtgagaaaaaacatactaacttcatcaaattccttcacccgcaagtcacagcatt |
99 |
Q |
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| T |
18224868 |
aatatttattaaattaccaatatgccctccattttcaatgttggtgtgagaacaaacatactaacttcatcaaattccttcacccgcaagtcacaccatt |
18224967 |
T |
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| Q |
100 |
ttttgtttcaacaaaatacataactaactaatataatttcaacacctcgaatataaggctgttgctttggtaattcatataagttgttgaacacatgtca |
199 |
Q |
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| T |
18224968 |
gtttatttcagcaaaatacataattaactaatataatttcaacacctcgaatataaggttgttgctttggtaattcatataagttgttgaacacatgtca |
18225067 |
T |
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| Q |
200 |
ctttaacttcttaagtgtatgtttggttttgcaacacaaaaaattggttgaacgtgatataatttagtatta |
271 |
Q |
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| T |
18225068 |
ctttaacttcttaagtgtatgtttagttttgcaacacaaaaaattggttgaacgtgatataatttagtatta |
18225139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 18229428 - 18229479
Alignment:
| Q |
48 |
agaaaaaacatactaacttcatcaaattccttcacccgcaagtcacagcatt |
99 |
Q |
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| T |
18229428 |
agaaaaaacatgctaacttcatcaaattccttcaaccgcaagtcacatcatt |
18229479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 43017502 - 43017567
Alignment:
| Q |
192 |
acatgtcactttaacttcttaagtgtatgtttggttttgcaac-acaaaaaattggttgaacgtga |
256 |
Q |
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| T |
43017502 |
acatgtcacattaacttgttaagtgtatgtttggttttgcaccaacaaaaagttggttgaacgtga |
43017567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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