View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_high_54 (Length: 296)

Name: NF1272_high_54
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_high_54
NF1272_high_54
[»] chr6 (10 HSPs)
chr6 (31-275)||(11170718-11170962)
chr6 (32-275)||(11209541-11209784)
chr6 (31-284)||(11196871-11197124)
chr6 (31-275)||(11276102-11276346)
chr6 (31-284)||(11156418-11156671)
chr6 (31-284)||(11200036-11200293)
chr6 (31-284)||(11241213-11241466)
chr6 (28-284)||(11161282-11161550)
chr6 (36-283)||(11133147-11133394)
chr6 (31-96)||(11314688-11314753)
[»] scaffold1207 (1 HSPs)
scaffold1207 (31-275)||(1036-1277)
[»] chr7 (15 HSPs)
chr7 (122-200)||(8382727-8382805)
chr7 (122-200)||(8602213-8602291)
chr7 (119-200)||(13333307-13333388)
chr7 (119-199)||(10494226-10494306)
chr7 (119-199)||(8585558-8585638)
chr7 (119-198)||(8628768-8628847)
chr7 (119-193)||(27830733-27830807)
chr7 (126-188)||(29577532-29577594)
chr7 (119-200)||(8654686-8654767)
chr7 (119-200)||(8667655-8667736)
chr7 (120-200)||(6789749-6789829)
chr7 (119-199)||(8671482-8671562)
chr7 (126-200)||(3147515-3147589)
chr7 (122-200)||(7877584-7877662)
chr7 (122-200)||(8538275-8538353)
[»] chr4 (3 HSPs)
chr4 (120-200)||(9335742-9335822)
chr4 (120-199)||(30775489-30775568)
chr4 (119-200)||(35132684-35132765)
[»] chr2 (4 HSPs)
chr2 (119-200)||(7542462-7542543)
chr2 (119-199)||(16661844-16661924)
chr2 (119-200)||(16657368-16657449)
chr2 (119-199)||(14703644-14703724)
[»] chr1 (1 HSPs)
chr1 (119-199)||(34466645-34466725)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 11170718 - 11170962
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170718 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 11170817  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170818 tgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 11170917  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaagg 275  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  11170918 tatgcaggcacagttataacaacatcctccactattgatccaagg 11170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 32 - 275
Target Start/End: Original strand, 11209541 - 11209784
Alignment:
Q  32 ctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||| |||||||    
T  11209541 ctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatat 11209640  T
Q  132 gcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagt 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209641 gcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagt 11209740  T
Q  232 atgcaggcacagttataacaacatccttcactgttgatccaagg 275  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  11209741 atgcaggcacagttataacaacatcatccactgttgatccaagg 11209784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 11196871 - 11197124
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    |||||||||||||||  |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||    
T  11196871 tctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccata 11196970  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11196971 tgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaag 11197070  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 284  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11197071 taagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 11197124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 11276102 - 11276346
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || || ||||||    
T  11276102 tctcaaaagtgagaacagacacgtccaaagtaccaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccata 11276201  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    ||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11276202 tgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaag 11276301  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaagg 275  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||    
T  11276302 tatgcaggcacagttataacaacatcctccactgttaatccaagg 11276346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 11156418 - 11156671
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    |||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||| |||||    
T  11156418 tctcaaatgtgagaatggacacgtccaaagtaccacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccata 11156517  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||    
T  11156518 tgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaag 11156617  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 284  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11156618 taagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttca 11156671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 11200036 - 11200293
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    |||||||||||||||  ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  11200036 tctcaaatgtgagaatggacacatccagagtaccaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccata 11200135  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactgg----cgttgtgagtcatt 226  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    |||||||| |||||    
T  11200136 tgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcatt 11200235  T
Q  227 aaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 284  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11200236 aaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttca 11200293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 31 - 284
Target Start/End: Complemental strand, 11241466 - 11241213
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    |||||||||||||||  |||||||||| ||||||||||||||| || ||||| | ||||| |||||||||||||||||  | ||||| || |||||||||    
T  11241466 tctcaaatgtgagaatggacacgtccagagtaccaccacctaaatcgaaaattagaacatgtctacatccatgattaagagttttcatgttaaggccata 11241367  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    |||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11241366 tgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgagtcattaaag 11241267  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 284  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11241266 taagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 11241213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 11161282 - 11161550
Alignment:
Q  28 caatctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggcc 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||| ||||||| |||||| ||    
T  11161282 caatctcaaatgtgagaatagacacgtccaaagtaccaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagacc 11161381  T
Q  128 atatgcaattgcagctgcagtaggc--------tcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactgg----cgt 215  Q
    ||||||||||||| |||||||||||        ||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||    |||    
T  11161382 atatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgt 11161481  T
Q  216 tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttca 284  Q
    |||||  |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11161482 tgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttca 11161550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 36 - 283
Target Start/End: Original strand, 11133147 - 11133394
Alignment:
Q  36 aatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaa 135  Q
    |||||||||| |||||| ||||| |||||||| ||||| |||||||  ||||||| | ||    |||||||||| ||||||  |||||| ||||||||||    
T  11133147 aatgtgagaatagacacatccaatgtaccacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaa 11133246  T
Q  136 ttgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgc 235  Q
    |||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||||| |||||  |||||||| |||||||||||||| ||    
T  11133247 ttgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagc 11133346  T
Q  236 aggcacagttataacaacatccttcactgttgatccaaggtaagcttc 283  Q
    ||| ||||||||||| ||||||||||||||||||||||||||| ||||    
T  11133347 aggaacagttataacgacatccttcactgttgatccaaggtaaacttc 11133394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 11314753 - 11314688
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctac 96  Q
    |||||| |||||||| |||||| ||||||||||| ||||| || || || ||||||||||||||||    
T  11314753 tctcaagtgtgagaatagacacatccaaagtaccgccacccaaatcgaagatgaaaacatttctac 11314688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 1036 - 1277
Alignment:
Q  31 tctcaaatgtgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccata 130  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||     |||||||   ||||| ||||||    
T  1036 tctcaaatttgagaacagacacgtccaaagtaccaccacctaagtcaaaaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccata 1132  T
Q  131 tgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaag 230  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  1133 tgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaag 1232  T
Q  231 tatgcaggcacagttataacaacatccttcactgttgatccaagg 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  1233 tatgcaggcacagttataacaacatcctccactgttgatccaagg 1277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
Q  122 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
Q  122 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 198  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 193  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  126 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 188  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
Q  120 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
Q  126 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
Q  122 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
T  7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
Q  122 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
T  8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
Q  120 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
Q  120 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 200  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||||||||||||||| || || || ||||| ||||| | ||  | ||||||||||||||| |||||| |||| |||||    
T  14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc 14703724  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
Q  119 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 199  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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