View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_high_58 (Length: 284)

Name: NF1272_high_58
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_high_58
NF1272_high_58
[»] chr8 (1 HSPs)
chr8 (1-284)||(29024861-29025144)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 29024861 - 29025144
Alignment:
Q  1 ttgatcgtagtagaagaaatggtagtacaaaagttgttaccttatatatattccaatacacatcaagtggaaagataactttcaatcgaatcttaacttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29024861 ttgatcgtagtagaagaaatggtagtacaaaagttgttaccttatatatattccaatatacatcaagcggaaagataactttcaatcgaatcttaacttc 29024960  T
Q  101 taatcggtataaacaagggcattttgagaatatcaaaggacatgtgagcaattgagaagattaatgaaacgactttctttcttttttactttatatatgt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29024961 taatcggtataaacaagggcattttgagaatattaaaggacatgtgagcaattgagaagattaatgaaacgactttctttcttttttactttataaatgt 29025060  T
Q  201 tagaagtctagagatccgatatcatctcatatgtatctcatcgggtttatgccattgtcgtacaatattgtattttcttaaagt 284  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  29025061 tagaagtctagagacccgatatcatctcatatgtatctcatccgatttatgctattgtcgtacaatattgtattttcttaaagt 29025144  T

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