View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_high_60 (Length: 270)
Name: NF1272_high_60
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 6708707 - 6708939
Alignment:
| Q |
9 |
gaataatatcatagttgtattcattcaattgacacaaacaaaaggagtttatgtaggtcaacaacacctagctcaactaactaactacttataactaatt |
108 |
Q |
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| T |
6708707 |
gaataatatcatagttgtattcattcaattgacacaaacaaaaggagtttatgtaggtcaacaacacctagctcaactaactaactacttataactaatt |
6708806 |
T |
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| Q |
109 |
acagaattagtttactagcttatctaagtaggagctaataccactgctaactaatcaaattgttttgggttttattctccgttttctaagaaaaacaagt |
208 |
Q |
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| T |
6708807 |
acagaattagtttactagcttatctaagtaggagctaataccactgctaactaatcaaattgttttgggttttattctccgttttctaagaaaaacaagt |
6708906 |
T |
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| Q |
209 |
tctagtaattcagagtctggtcgtggggttagt |
241 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6708907 |
tctagtaattcagagtctggtcgtggggttagt |
6708939 |
T |
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