View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_high_9 (Length: 602)

Name: NF1272_high_9
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_high_9
NF1272_high_9
[»] chr7 (2 HSPs)
chr7 (205-595)||(1801092-1801482)
chr7 (41-127)||(1801560-1801646)
[»] chr6 (9 HSPs)
chr6 (212-553)||(2829142-2829486)
chr6 (212-553)||(2842548-2842892)
chr6 (212-553)||(2832728-2833072)
chr6 (335-547)||(14578259-14578471)
chr6 (212-550)||(2859992-2860333)
chr6 (255-535)||(2884610-2884893)
chr6 (212-535)||(2865377-2865703)
chr6 (415-535)||(2909641-2909760)
chr6 (212-299)||(2909435-2909522)
[»] chr4 (1 HSPs)
chr4 (254-292)||(44396656-44396694)
[»] chr1 (2 HSPs)
chr1 (261-299)||(2178209-2178247)
chr1 (257-313)||(51316111-51316167)


Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 205 - 595
Target Start/End: Complemental strand, 1801482 - 1801092
Alignment:
Q  205 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801482 caagtgcttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataac 1801383  T
Q  305 ttccaacaaatcaccaatttcatcaaacaaatcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataac 404  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801382 ttccaacaaatcaccaatttcatcaaacaaataatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataac 1801283  T
Q  405 tcaacatgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcag 504  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  1801282 tcaacgtgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctcccctccacacgcgg 1801183  T
Q  505 accaaattccatcaataaaattcaataaaccagataaagttaccttactatttttactattattctcttcttcctcttttttcctatgata 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  1801182 accaaattccatcaataaaattcaataaaccagataaagttaccttactatttttactgttattttcttcttcctcttttttcctatgata 1801092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 1801646 - 1801560
Alignment:
Q  41 gttactaaatagatgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801646 gttactaaatagatgtttcaaccacattgtaacaatatatctccatcacaaaagcatattatttttcacactcacaatgtaaccatt 1801560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 212 - 553
Target Start/End: Complemental strand, 2829486 - 2829142
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 311  Q
    |||||||||| ||||||||| ||| || | ||||||||  |  ||||| ||||||||||| ||||||||||||||||||||||||||| |   |||||||    
T  2829486 ttgaatcaaactcttcaaacaagtttcaaaatcttcatcaattgactttggcatcaaattttcagcaacatcagcaggtgtcatattagtcttttccaac 2829387  T
Q  312 aaatcaccaatttcatcaaacaaatcat---gtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 408  Q
    || |   ||||      ||| |||||||   | ||||||| |||| |||| |||||  |||| ||||| ||||||| | | | ||||||||| |  || |    
T  2829386 aatttttcaataattggaaataaatcatcatgagactcaacatcccaatagttctttgcaagcaccttgaaagcttgatagctacaataagacatttcta 2829287  T
Q  409 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 508  Q
     ||| ||||||||||||||  ||||||| || || ||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||    
T  2829286 tatgcttatccatccttcccctcctaattagggcaggatcaagtttgtccacaaaatttgttgtgaaaattatgatcctctctcctccacatgcagacca 2829187  T
Q  509 aattccatcaataaaattcaataaaccagataaagttaccttact 553  Q
    ||| ||||||||||||||||| |||||||| | ||||||| ||||    
T  2829186 aatcccatcaataaaattcaacaaaccagaaagagttaccatact 2829142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 212 - 553
Target Start/End: Complemental strand, 2842892 - 2842548
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 311  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| ||||||||||| ||||||||||||||||||||||||||| |  ||||||||    
T  2842892 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattttcagcaacatcagcaggtgtcatattagtctcttccaac 2842793  T
Q  312 aa---atcaccaatttcatcaaacaaatcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 408  Q
    ||    |||  ||||  |   ||   ||||||  |||||| ||| || || ||  |  |||||||||||||||||| | | | ||||||||| |  || |    
T  2842792 aacttttcaataattggaaataaatcatcatgaaactcaacatctaagtagtttcttgcaagaaccttaaaagcttgatagctacaataagacatttcta 2842693  T
Q  409 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 508  Q
     ||| |||||||| |||||| |||| |||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||  |||||| || |||||    
T  2842692 tatgcttatccattcttcctctccttataagagcaggatcaagtttatccacaaaattagttgtgaaaattatgatcctctctgatccacatgctgacca 2842593  T
Q  509 aattccatcaataaaattcaataaaccagataaagttaccttact 553  Q
    ||||||||||||||||||||| ||||| || | ||||||||||||    
T  2842592 aattccatcaataaaattcaacaaacccgaaagagttaccttact 2842548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 212 - 553
Target Start/End: Original strand, 2832728 - 2833072
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 311  Q
    |||||||||||||||||| | | | || | ||||||| | |  ||||| ||||||||||||||||||||||||||||||||||||||| |  || |||||    
T  2832728 ttgaatcaaattcttcaagcaactttcaaaatcttcagtgattgactttggcatcaaattctcagcaacatcagcaggtgtcatattagtctctcccaac 2832827  T
Q  312 aaatcaccaatttcatcaaacaaatcat---gtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 408  Q
    || |   ||||      |||||||||||   | | ||||| ||| || || ||  |  |||||||||| ||||||| | | | ||||||||| |  || |    
T  2832828 aacttttcaataattggaaacaaatcatcatgagtctcaacatctaagtagtttcttgcaagaaccttgaaagcttgatagctacaataagacatttcta 2832927  T
Q  409 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 508  Q
     ||| |||||||| |||||  |||| |||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||||  |||||| || |||||    
T  2832928 tatgcttatccattcttcccctccttataagagcaggatcaagtttgtccacaaaatttgttgtgaaaattattatcctctctgatccacatgctgacca 2833027  T
Q  509 aattccatcaataaaattcaataaaccagataaagttaccttact 553  Q
    |||||||||||| |||||||| |||||||| | ||||||||||||    
T  2833028 aattccatcaatgaaattcaacaaaccagaaagagttaccttact 2833072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 335 - 547
Target Start/End: Complemental strand, 14578471 - 14578259
Alignment:
Q  335 atcatgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctgtccta 434  Q
    |||||| ||||||| |||| ||||||||||  |||| || || || |||||| | | |||||| || |  |||| |||  |||||||||||||  |||||    
T  14578471 atcatgagactcaacatcccaataattctttgcaagcactttgaatgcttcatagctacaatatgacatttcaatatgcatatccatccttcccctccta 14578372  T
Q  435 ataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattcaataaac 534  Q
    ||||||||  |||||||||| |||||||| || || ||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||| ||||    
T  14578371 ataagagcatgatcaagtttatccacaaagttggttgtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaac 14578272  T
Q  535 cagataaagttac 547  Q
    |||| | ||||||    
T  14578271 cagaaagagttac 14578259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 212 - 550
Target Start/End: Original strand, 2859992 - 2860333
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 311  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| ||||||| |  || |||||    
T  2859992 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatattagtctctcccaac 2860091  T
Q  312 aaatcaccaatttcatcaaacaaatca---tgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 408  Q
    || |   ||||      ||||||||||   || ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || |  || |    
T  2860092 aacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaacgcttgatagctacaataggacatttcta 2860191  T
Q  409 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 508  Q
      |||||||||||||||||  ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||    
T  2860192 tgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgacca 2860291  T
Q  509 aattccatcaataaaattcaataaaccagataaagttacctt 550  Q
    ||||||||||||| ||||||| ||||| || | |||||||||    
T  2860292 aattccatcaatagaattcaacaaacccgaaagagttacctt 2860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 255 - 535
Target Start/End: Original strand, 2884610 - 2884893
Alignment:
Q  255 gacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaacaaatcaccaatttcatcaaacaaatca---tgtgactcaatat 351  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| |  || ||||||| |   ||||      ||||||||||   || ||||||| ||    
T  2884610 gactttggcatcaaattctcggcaacatcagcaggtgacatattagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacat 2884709  T
Q  352 ccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaacatgtttatccatccttcctgtcctaataagagctggatcaag 451  Q
    |||| || |||||| |||||||||| || |||| | | | |||||| || |  || |  |||||||||||||||||  ||||||| ||||| ||||||||    
T  2884710 ccaagtagttcttagcaagaaccttgaacgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaag 2884809  T
Q  452 tttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattccatcaataaaattcaataaacc 535  Q
    ||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||||||||||||||| ||||||| |||||    
T  2884810 tttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattcaacaaacc 2884893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 212 - 535
Target Start/End: Original strand, 2865377 - 2865703
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaac 311  Q
    |||||||||||||||||| | || ||| ||||||||  |    ||||| |||||||||||||| ||||||||||| |||| ||||||| |  || |||||    
T  2865377 ttgaatcaaattcttcaagcaagcctcaacatcttcggtggtcgactttggcatcaaattctcggcaacatcagctggtgacatattagtctctcccaac 2865476  T
Q  312 aaatcaccaatttcatcaaacaaatca---tgtgactcaatatccaaataattcttaacaagaaccttaaaagcttcaaaacaacaataagataactcaa 408  Q
    || |   ||||      ||||||||||   || ||||||| |||||| || |||||| |||||||||| || |||| | | | |||||| || |  || |    
T  2865477 aacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaaccttgaatgcttgatatctacaataggacatttcta 2865576  T
Q  409 catgtttatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagacca 508  Q
      |||||||||||||||||  ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||| ||||  ||||||||||| |  |||||    
T  2865577 tgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgtgaaaattatgatccgttctcctccacatgatgacca 2865676  T
Q  509 aattccatcaataaaattcaataaacc 535  Q
    ||||||||||||| ||||||| |||||    
T  2865677 aattccatcaatagaattcaacaaacc 2865703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 415 - 535
Target Start/End: Original strand, 2909641 - 2909760
Alignment:
Q  415 tatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctctcctccacacgcagaccaaattcc 514  Q
    |||||||||||||  |||| |||||||| ||||||||||| ||||||||||| || |||||| |||| ||||| ||||||||||| |  |||||||||||    
T  2909641 tatccatccttcccctccttataagagcaggatcaagtttgtccacaaaattagttgtgaaa-ttatgatcctttctcctccacatgttgaccaaattcc 2909739  T
Q  515 atcaataaaattcaataaacc 535  Q
    ||||||||||||||| |||||    
T  2909740 atcaataaaattcaacaaacc 2909760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 2909435 - 2909522
Alignment:
Q  212 ttgaatcaaattcttcaaactagtctcgacatcttcattcacagacttaggcatcaaattctcagcaacatcagcaggtgtcatatta 299  Q
    |||||||||||||||||  | |||||| ||||||||| | |  | ||| |||||||||||||||||||||||||||||||||||||||    
T  2909435 ttgaatcaaattcttcacgcaagtctcaacatcttcaatgatcgtctttggcatcaaattctcagcaacatcagcaggtgtcatatta 2909522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 44396694 - 44396656
Alignment:
Q  254 agacttaggcatcaaattctcagcaacatcagcaggtgt 292  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  44396694 agacttaggcataagattctcagcaacatcagcaggtgt 44396656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 2178247 - 2178209
Alignment:
Q  261 ggcatcaaattctcagcaacatcagcaggtgtcatatta 299  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  2178247 ggcatcaaattttcagcaacatcagctggtgtcatatta 2178209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 51316111 - 51316167
Alignment:
Q  257 cttaggcatcaaattctcagcaacatcagcaggtgtcatattaataacttccaacaa 313  Q
    |||||||||||| || | |||||||||||| |||||||||||| |  ||||||||||    
T  51316111 cttaggcatcaagtttttagcaacatcagctggtgtcatattagtctcttccaacaa 51316167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University