View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_100 (Length: 206)
Name: NF1272_low_100
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_100 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 17579401 - 17579568
Alignment:
| Q |
21 |
catatagtgtgtaagcaatagtatattgagttgtggttgtgaagtagcaaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgg |
120 |
Q |
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| T |
17579401 |
cataaagtgtgtaagcaatagtatattgagttgtggttgtgaagtagcaaaaggttagacaatgaataatgggcaatcttgaaatcccataagtgaatgg |
17579500 |
T |
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| Q |
121 |
gctatatttagagattccaagcaagcaaagttcagatgtccactttaccaactgaagtgatccctctt |
188 |
Q |
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| T |
17579501 |
gctatacttagagattccaagcaagcaaagttcagatgtccactttaccaactgaaggtatccctctt |
17579568 |
T |
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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 16381888 - 16381987
Alignment:
| Q |
68 |
caaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgggctatatttagagattccaagcaagcaaagttcagatgtccacttta |
167 |
Q |
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| T |
16381888 |
caaaaggttaaacaatgaacaataggcaatcttgaaatcccataagtgaatggactatatttagatattgcaaacaacaaaagttcagatacccacttta |
16381987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 17407 - 17302
Alignment:
| Q |
62 |
aagtagcaaaaggttagacagtgaataatgggcaatcttgaaatcccataagtgaatgggctatatttagagattccaagcaagcaaagttcagatgtcc |
161 |
Q |
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| T |
17407 |
aagtaacaaaaagttaaacaatgaatagtaggcaatcttgaaaggccataagtgaatggactatatttagagattgcaagtaacaaaagttcagatgacc |
17308 |
T |
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| Q |
162 |
acttta |
167 |
Q |
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| T |
17307 |
atttta |
17302 |
T |
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