View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_12 (Length: 587)
Name: NF1272_low_12
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 355 - 576
Target Start/End: Complemental strand, 11088405 - 11088184
Alignment:
| Q |
355 |
caatttcaaattccgggctcctccccatcttcacctctttttccctcaactctttaccactaatccattgaaacaaatgccaactatgtctaccacaaca |
454 |
Q |
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| T |
11088405 |
caatttcaaattccgggctcctccccatcttcacctcttttttcctcgactctttaccactaatccattgaaacaaatgtcaactatgtctaccacaaca |
11088306 |
T |
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| Q |
455 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatatatatta |
554 |
Q |
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| T |
11088305 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgtcatatatatta |
11088206 |
T |
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| Q |
555 |
cgataaccacactcctcttcat |
576 |
Q |
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|||||| ||||||||||||||| |
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| T |
11088205 |
cgataatcacactcctcttcat |
11088184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 80 - 326
Target Start/End: Complemental strand, 11088791 - 11088535
Alignment:
| Q |
80 |
tcttagttacgtgatggaaccattcatgtctacagaggaactgaatgtgaatcaatagaacaaggagttgataaatgtggtccatgactatagactttg- |
178 |
Q |
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| T |
11088791 |
tcttatttacgtgatggaaccattcatgtctatagaggaactgaatgtgaatcaatagaacaaagagttgataaacgtggtccatgactatagagtttgg |
11088692 |
T |
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| Q |
179 |
---gaaacaacttcaaaaaatcattcagatcagtttcatttgatgatgaatgat---ttaattgataataatgaatcatgagaaaaaattatcgtatcat |
272 |
Q |
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| T |
11088691 |
aaagaaacaacttcaaaaaatcattcagatcagtgtcatttgatgatgaatgatttattaattgataataatgaatcaagagaaaaatttatcatatcat |
11088592 |
T |
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| Q |
273 |
atca---tacttcgcaaagttcggggttcaaatcccaactaccacgaaaaaattatc |
326 |
Q |
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| T |
11088591 |
atcatagtactttgcaaagtctggggttcaaatcccgaccaccacgaaaaaattatc |
11088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 574
Target Start/End: Original strand, 24508674 - 24508797
Alignment:
| Q |
451 |
aacatatcacaattgg-ttattcctcaattccaccatcc-tcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatat |
548 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||| | |||||| |||||||||||| |||| |||||||||||| || | |
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| T |
24508674 |
aacatatcacaattggattattcctcaattccatcatcccttctttaaaactaattcaacataaactataaatcattaattctaccaccatacacc--ac |
24508771 |
T |
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| Q |
549 |
atattacgataaccacactcctcttc |
574 |
Q |
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| T |
24508772 |
atattacgataactacactcctcttc |
24508797 |
T |
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