View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_13 (Length: 562)
Name: NF1272_low_13
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 51114952 - 51115415
Alignment:
| Q |
1 |
caataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggtt |
100 |
Q |
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| T |
51114952 |
caataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggtt |
51115051 |
T |
|
| Q |
101 |
gttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttctatttagtttttgatc |
200 |
Q |
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| T |
51115052 |
gttctctgtttcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagatttaggtgtacattttgttgtttctatttagtttttgatc |
51115151 |
T |
|
| Q |
201 |
aactttcgttgttgcttaatgattctgtttgtggtgacttgattattgaatacacaagtctctcatgtatgctattttttgcgacactttcacctcacct |
300 |
Q |
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| T |
51115152 |
aactttcgttgttgcttaatgattctgtttgt-gtgacttgattattgaat--acaagtctctcatgtatgctattttttgcgacactttcacctcacct |
51115248 |
T |
|
| Q |
301 |
ccttagtatttatgtaaattatgctaggtatttgtttaatcattaaacaatctgttattgtgtgcattttggtttagccttgggtaaattggagagtagt |
400 |
Q |
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| T |
51115249 |
ccttagtatttatgtaaattatgctaggtatttgtttaatcattaaacaatctgttattgtgtgcattttggtttagccttgggtaaattggagagtagt |
51115348 |
T |
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| Q |
401 |
ctaattagaattaaagaacaactattgggaaattgaccgagactaacttacttatcaaccaactatt |
467 |
Q |
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| T |
51115349 |
ctaattagaattaaagaacaactattgggaaattgaccgagactaacttacttatcaaccaactatt |
51115415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 1119125 - 1119198
Alignment:
| Q |
96 |
tggttgttctctgtatcaatatttcaaatacaatggatggcttacaaaactatgactcaggaagattttggtgt |
169 |
Q |
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|||||||||||||| ||| ||||||| ||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
1119125 |
tggttgttctctgtttcagtatttcagttacaatgtacggcttacaaaactacgactcaggaagattttggtgt |
1119198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 29020718 - 29020664
Alignment:
| Q |
132 |
atggcttacaaaactatgactcaggaagattttggtgtatattttgttgtttcta |
186 |
Q |
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| T |
29020718 |
atggtttacagaactatgactcaggaagattttggtgtattttgtgttgtctcta |
29020664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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