View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_14 (Length: 558)
Name: NF1272_low_14
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 281 - 487
Target Start/End: Original strand, 17850653 - 17850855
Alignment:
| Q |
281 |
aatctccccgcatgcatacctgacctccgcgactgataagtccatgttgactgtgcacaaaaagacgaaccacgactctacaaaggtatcactacttatg |
380 |
Q |
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| T |
17850653 |
aatctccgcgcatacgtacctgacctccacgactgataagtccatgttgactgtgcacaaaaagacgcaccacgactctacaagggtatcactacttatg |
17850752 |
T |
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| Q |
381 |
caagcaaggtaataaacagaaacgacagaaaatgatcgatgaaatcggtacttgtattgatttatgaatgaaatagtacaatggatatccttagaacaaa |
480 |
Q |
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| T |
17850753 |
caa----ggtaataaacagaaacgacagaaaatgatcgatgaaatcagtacttgtattgatttatgaatgaaatagtacaatggatatccttagaacaaa |
17850848 |
T |
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| Q |
481 |
atcaatt |
487 |
Q |
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| T |
17850849 |
atcaatt |
17850855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 17850362 - 17850480
Alignment:
| Q |
9 |
caataatattctattgaaagaccttaagaagcatcacttgttgataaggatttgaagaagtccaaaagttggaccatatgtgttcacacatttgaaatgt |
108 |
Q |
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| T |
17850362 |
caataatattctattgaaagaccttaagaagcatcatttgtggataaggatttgaagaagtccaaaagttggaccatatgtgttcacacatttgaaatgt |
17850461 |
T |
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| Q |
109 |
actccaacagagaggtatc |
127 |
Q |
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| T |
17850462 |
actccaacagagaggtatc |
17850480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 17850487 - 17850526
Alignment:
| Q |
212 |
tttccagcaacaatacatagtaacctcgagtaatgaaacc |
251 |
Q |
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| T |
17850487 |
tttccagcaacaatacatagtaacctcgagtaatgaaacc |
17850526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 523
Target Start/End: Original strand, 17852834 - 17852870
Alignment:
| Q |
487 |
taagcatatataaatgaattttaacatacactttcat |
523 |
Q |
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| T |
17852834 |
taagcatatataaatgaatttccacatacactttcat |
17852870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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