View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_16 (Length: 511)
Name: NF1272_low_16
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 147 - 501
Target Start/End: Original strand, 4398292 - 4398649
Alignment:
| Q |
147 |
tttcgcataagctcaaaataaatcttatta-aatgggtcataagtggtttattgtttagacatcaaatgtacatgcaactattgcatttgcatcttgtac |
245 |
Q |
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| T |
4398292 |
tttcgcataaactcaaaataaatcttattcgaatgggtcctaagtggattattgtttagacatcaaatgtacatgcaactattgaatttgcatcttgtac |
4398391 |
T |
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| Q |
246 |
ctcttttcgtgaatgattacattcatgcactatggacnnnnnnnttttgaataaatgcactatggacaattaaaccccat--ggtgaatttcaaccattt |
343 |
Q |
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| T |
4398392 |
ctcttttcgtgaatgattacattcatgcactatggacaaattttttttgaataaatgcactatggacaattaaaccccatatggtgaatttcaaccattt |
4398491 |
T |
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| Q |
344 |
ttagtggcaactttagagtacaattttctttaatttcttttttggcgaagggtacgattttcttgacgcattaacatctagtggatgaaatatattgatt |
443 |
Q |
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| T |
4398492 |
ttagtggcaactttagtgtacaattttctttaatttcttttttggcgaagggtacgattttcttgacgcattaacatctagtggatgaaatatattgatt |
4398591 |
T |
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| Q |
444 |
tattttaggcttataaatccactgttggtctctcaatcaagtatcataactatctgtg |
501 |
Q |
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| T |
4398592 |
tattttaggcttataaatccactgttgatctctcaatcaagtatcataactatctgtg |
4398649 |
T |
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