View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_17 (Length: 504)
Name: NF1272_low_17
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 25 - 495
Target Start/End: Complemental strand, 51114920 - 51114439
Alignment:
| Q |
25 |
aatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgctggcgtatgcaga |
124 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51114920 |
aatgcagaaaagaatgagtagtcagtcaatagtttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcaga |
51114821 |
T |
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| Q |
125 |
aagatgccaattttcgatggaactttcaacacaacgaggaattagaagaatgttgattagttttaagatagtttcacannnnnnnnaagaagaagtcaaa |
224 |
Q |
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| T |
51114820 |
aagatgccaattttcgatggaactttcaacacgacgaggaattagaagaatattgattagttttaagatagtttcacattttttttaagaagaagtcaaa |
51114721 |
T |
|
| Q |
225 |
ctaacacaccaaaattggcact-aagaggatcaaaccagagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtac |
323 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114720 |
ctaacacaccaaaattggcactgaagaggatcaaactagagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtat |
51114621 |
T |
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| Q |
324 |
cttatttgccgtgtgaaatgaact----------acatttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatgg |
413 |
Q |
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| T |
51114620 |
cttatttgccgtgtgaaatgaactacagacatacacatttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatgg |
51114521 |
T |
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| Q |
414 |
acatgaataattagcagaatattttctcagatatctnnnnnnngaaagagataatcaagaattaaatttgtactagaataat |
495 |
Q |
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| T |
51114520 |
acatgaataatttgcagaatattttctcagatatctaaaaaaagaaagagataatcaagaattaaatttgtactagaataat |
51114439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 5768905 - 5768822
Alignment:
| Q |
67 |
caatatcagacaaagcataatttcaaaataagaaacataatatgctggcgtatgcagaaagatgccaattttcgatggaacttt |
150 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||||||| | | || ||||||||||||||| |||| |||||||||| |
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| T |
5768905 |
caatatcaaacaaaggataacttcaaaataagaaacataatatgtagccataagcagaaagatgccaaatttccatggaacttt |
5768822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 1118765 - 1118657
Alignment:
| Q |
49 |
gtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgctggcgtatgcagaaagatgccaattttcgatggaact |
148 |
Q |
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| T |
1118765 |
gtcaatatcttcaaaaac-aataccagacaaagcataatttaagaataagaaacataatatgtgggtctcagcagaaagatgcatattttccatggaatt |
1118667 |
T |
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| Q |
149 |
ttcaacacaa |
158 |
Q |
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| T |
1118666 |
atcaacacaa |
1118657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 552390 - 552447
Alignment:
| Q |
101 |
acataatatgctggcgtatgcagaaagatgccaattttcgatggaactttcaacacaa |
158 |
Q |
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| T |
552390 |
acataatatgttggcacgtgcagaaagatgccaatatttcatggaactttcaacacaa |
552447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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