View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_19 (Length: 501)
Name: NF1272_low_19
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_19 |
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| [»] scaffold0071 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 27499855 - 27499391
Alignment:
| Q |
8 |
cgaagaatattgagcatctacaaatgaatcattcccttaattgggtaagaactatacttatatgaatcaacttcaaggatatgtgcaccattgccaacca |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27499855 |
cgaataatattgagcatctacaaatgaatcattcccttaattgggtaggaactatacttatatgaatcaacttcaaggatatgtgcaccattgccaacta |
27499756 |
T |
|
| Q |
108 |
aaaacaaacgtttctatttctatcctttcaatattaagctttgactacccataaccatggtaaaatcaagtgatgaaaactcttttgtagccaaatactt |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499755 |
aaaacaaacgtttctatttctatcatttcaatattaagctttgactacccataaccatggtaaaatcaagtgatgaaaactcttttgtagccaaatactt |
27499656 |
T |
|
| Q |
208 |
gcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggattttaacccacacccatcaatatcaaggattt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
27499655 |
gcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcctggattttaacccacacctatcaatatcaaggattt |
27499556 |
T |
|
| Q |
308 |
tggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaagccctagattcagatatcatcttagttaccgctcccaaatcaggta |
407 |
Q |
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|||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499555 |
tggattgccacaaaaaaatttcaaggtgttttatcttgtcagaagcactttcaagccctagattcagatatcatcttagttaccgctcccaaatcaggta |
27499456 |
T |
|
| Q |
408 |
ccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataac |
472 |
Q |
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| T |
27499455 |
ccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcataac |
27499391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 169 - 471
Target Start/End: Original strand, 27504226 - 27504528
Alignment:
| Q |
169 |
aaaatcaagtgatgaaaactcttttgtagccaaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaa |
268 |
Q |
| |
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||||||||||||||||||| || | | | ||||||||| |||| ||||||||| | |||||||||||||| ||||||| |||||||||| || | || |
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| T |
27504226 |
aaaatcaagtgatgaaaaccctactctgccaaaatacttgaaagaagatgacttagggcaagaatgcaaggacttgatacaaaccttgccattagtagaa |
27504325 |
T |
|
| Q |
269 |
gcatggattttaacccacacc-catcaatatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaagcccta |
367 |
Q |
| |
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| ||||| | ||||| ||| ||||||||||||||||| |||| | || ||||||||||||| |||||||| ||||||||||||||||||| | |
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| T |
27504326 |
gggtggatcg-atcccacctttcatgaatatcaaggattttggtttgctcccaagattctccaaggtgctttatcttttcaaaagcactttcaagccatt |
27504424 |
T |
|
| Q |
368 |
gattcagatatcatcttagttaccgctcccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattc |
467 |
Q |
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||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
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| T |
27504425 |
gatacagatattatcttagttacaaatcccaaatcaggtaccacttggctcaaagcattgacttttgctttgataaaccgtaacaaatatccaaatattc |
27504524 |
T |
|
| Q |
468 |
ataa |
471 |
Q |
| |
|
|||| |
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|
| T |
27504525 |
ataa |
27504528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 27544041 - 27544091
Alignment:
| Q |
227 |
caagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggatt |
277 |
Q |
| |
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||||||||||||||||||||| |||| ||||||| |||||||| ||||||| |
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| T |
27544041 |
caagaatgcaaggagttgatatccacattgccattagaaaaaggatggatt |
27544091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 163 - 471
Target Start/End: Complemental strand, 11439730 - 11439422
Alignment:
| Q |
163 |
catggtaaaatcaagtgatgaaaactcttttgtagccaaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatca |
262 |
Q |
| |
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||||| ||||| | |||||||||||||| |||| | |||||||||||||| ||||| ||| || |||||||||||||||| |||| ||||| |||| | |
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| T |
11439730 |
catggcaaaattaggtgatgaaaactctcttgtgccaaaatacttgcaagaagatgagttaggcaaagaatgcaaggagttaatacaaaccttaccatta |
11439631 |
T |
|
| Q |
263 |
gaaaaagcatggattttaacccacacccatcaatatcaaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaag |
362 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||| |||||||||| |
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| T |
11439630 |
gaaaaaggatggatcagtacccactttcatcaatatcaaggattttggattggcacgagaattcttcaaggtgttttatcttgtcaaaaacactttcaag |
11439531 |
T |
|
| Q |
363 |
ccctagattcagatatcatcttagttaccgctcccaaatcaggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaat |
462 |
Q |
| |
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|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||| || |
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| T |
11439530 |
cccttaatacagatatcctcttagttaccactcccaaatcaggtaccacttggctcaaagcattaacctttgctttaataaaccgcaaaaaatatcaaaa |
11439431 |
T |
|
| Q |
463 |
tattcataa |
471 |
Q |
| |
|
||||||||| |
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|
| T |
11439430 |
tattcataa |
11439422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 200 - 466
Target Start/End: Complemental strand, 11318117 - 11317850
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggattttaacccacacccatcaatatc |
299 |
Q |
| |
|
|||||| |||||| | ||| ||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||| | ||||| ||||||||||| |
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|
| T |
11318117 |
aaatacatgcaagcagctgagttaggccaagaatgtaaggagttgatacccaccttgccattagaaaaaggttggattacatcccacttccatcaatatc |
11318018 |
T |
|
| Q |
300 |
aaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaagccctagattcagatatcatcttagttaccgctcccaa |
399 |
Q |
| |
|
||||||||||| || |||||| |||||||||||| |||||||||||| ||||| ||||||||||| ||| | |||||| || |||||||| |||| || |
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|
| T |
11318017 |
aaggattttggcttaccacaaggattctccaaggtactttatcttgtcataagcaatttcaagcccttgatactgatatcctcatagttaccactccaaa |
11317918 |
T |
|
| Q |
400 |
atcaggtaccacttggctcaaagcattgac-ttttgctttgctaaaccgcaacaaatatccaattatt |
466 |
Q |
| |
|
| |||| ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||| |||||||| |
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|
| T |
11317917 |
agcaggcaccacttggcttaaagcattgactttttgctttgctaaatcgcgacaaatattcaattatt |
11317850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 408
Target Start/End: Original strand, 15460309 - 15460517
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggattttaacccacacccatcaatatc |
299 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||||||| |||||||||| ||||| ||| || |||| ||| ||| ||||||| || ||||||| |
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| T |
15460309 |
aaatacttgcaagaagatgacataaccctagaatgcaaagagttgatacaaaccttaccaatggagaaaggctgggtttcaacccaccttcaccaatatc |
15460408 |
T |
|
| Q |
300 |
aaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaagccctagattcagatatcatcttagttaccgctcccaa |
399 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||| |||||||||| |||||||||||||||||||| ||| ||||||| ||| | | |||| |||| || |
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|
| T |
15460409 |
aaggattttggcaaaccaaaaagcatcttcaaggagttttatcttttcaaaagcactttcaagcccatgatacagatataatccttgctacctctccaaa |
15460508 |
T |
|
| Q |
400 |
atcaggtac |
408 |
Q |
| |
|
| ||||||| |
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|
| T |
15460509 |
agcaggtac |
15460517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 469
Target Start/End: Original strand, 15460773 - 15460840
Alignment:
| Q |
402 |
caggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcat |
469 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||| ||||| || | |||||||| ||||||| |
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|
| T |
15460773 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcat |
15460840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 408
Target Start/End: Complemental strand, 1883 - 1675
Alignment:
| Q |
200 |
aaatacttgcaagatgatgacttaagccaagaatgcaaggagttgatacccaccttgccatcagaaaaagcatggattttaacccacacccatcaatatc |
299 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||||||| |||||||||| ||||| ||| || |||| ||| ||| ||||||| || ||||||| |
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|
| T |
1883 |
aaatacttgcaagaagatgacataaccctagaatgcaaagagttgatacaaaccttaccaatggagaaaggctgggtttcaacccaccttcaccaatatc |
1784 |
T |
|
| Q |
300 |
aaggattttggattgccacaaaaattctccaaggtgttttatcttgtcaaaagcactttcaagccctagattcagatatcatcttagttaccgctcccaa |
399 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||| |||||||||| |||||||||||||||||||| ||| ||||||| ||| | | |||| |||| || |
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|
| T |
1783 |
aaggattttggcaaaccaaaaagcatcttcaaggagttttatcttttcaaaagcactttcaagcccatgatacagatataatccttgctacctctccaaa |
1684 |
T |
|
| Q |
400 |
atcaggtac |
408 |
Q |
| |
|
| ||||||| |
|
|
| T |
1683 |
agcaggtac |
1675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 1419 - 1352
Alignment:
| Q |
402 |
caggtaccacttggctcaaagcattgacttttgctttgctaaaccgcaacaaatatccaattattcat |
469 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||| ||||| || | |||||||| ||||||| |
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|
| T |
1419 |
caggtaccacttggctcaaagcattgattttcgccttgctcaaccgtaagagatatccaaatattcat |
1352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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