View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_20 (Length: 500)
Name: NF1272_low_20
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 48 - 487
Target Start/End: Original strand, 26003468 - 26003909
Alignment:
| Q |
48 |
ttatgatcatcaaactacaaaactacatttgaagtttcattaaaacaaacacagacaactaacacgacaccagttataatttagtaaaatgaatgtaatt |
147 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26003468 |
ttatgatcatcaaactacagaactacgtttgaagtttcattaatacaaacacagacgactaacacgacaccagt-ataatttagtaaaatgaatgtaatt |
26003566 |
T |
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| Q |
148 |
acatgttcagtgcccgatatcaatgtatgttggacaccagagacgtcttcaatctgaactgtagatgcta-------taggatgataggatgccttcatt |
240 |
Q |
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| T |
26003567 |
acatgttcagtgcccgatatcaatgtatgttggacaccagagacgtcttcaatctgaagtgtagatgctacataaattaggatgataggatgccttcatt |
26003666 |
T |
|
| Q |
241 |
tcattctttaacattcttcattacaattagtctgtagatagggaatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagata |
340 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003667 |
tcattctttaacattcttcattacaattagtcagtagatagggaatgtgataatagttaacagaaagaaagacggtgccctaaaatagagtacctagata |
26003766 |
T |
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| Q |
341 |
ttattctgtaaaaatagcagaaatttggtgaaattttgtaacctgtagctgaggagagagggaataggacgtataaagtaannnnnnngtaaaatgatct |
440 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||| ||| |||||||| |
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| T |
26003767 |
ttattctgtaaaaatagcagaaatttggtaaaattttgtaacctatagctgaggaga----gaataggatgtataaagtaacttttttgtataatgatct |
26003862 |
T |
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| Q |
441 |
tgatttaatgataaacannnnnnnagtacaaagatattgcacaggtt |
487 |
Q |
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| T |
26003863 |
tgatttaatgataaacatttttttagtacaaagatattgcagaggtt |
26003909 |
T |
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