View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_21 (Length: 494)
Name: NF1272_low_21
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_21 |
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| [»] scaffold0991 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 4822820 - 4822366
Alignment:
| Q |
11 |
cacagaaaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcaca |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822820 |
cacagaaaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcaca |
4822721 |
T |
|
| Q |
111 |
gggtttgcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgag |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822720 |
gggtttgcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgag |
4822621 |
T |
|
| Q |
211 |
ttacttattccgcaactcataacaagtgtaccttaacaccttctgcaataagaccttgagccaaaacaacagaggtagtagttccatcgccagccaagtc |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822620 |
ttacttattccacaactcataacaagtgtaccttaacaccttctgcaataagaccttgagccaaaacaacagaggtagtagttccatcgccagccaagtc |
4822521 |
T |
|
| Q |
311 |
atttgtcttggcagccgcctgtctcaccaatttagcaccaatattctcaaccggatcctccaactccaccttttcaaccaaaatgcaaacataacatcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822520 |
atttgtcttggcagccgcctgtctcaccaatttagcaccaatattctcaaccggatcctccaactccaccttttcaaccaaaatgcaaacataacatcaa |
4822421 |
T |
|
| Q |
411 |
atgaaacaccacacataactaattcaccaaaaacaataattcaagcaaaacctta |
465 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4822420 |
atgaaacaccacacataactaattcaccaaaaacaataattcaagcaaaacctta |
4822366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 443
Target Start/End: Complemental strand, 4834668 - 4834266
Alignment:
| Q |
17 |
aaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcacagggttt |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4834668 |
aaaacaagaaaacggcttcacctcttttgacattagtttaagttcagcgacaagagctttcgctgtcttctcaatgccacgtgtgataagcacagggttt |
4834569 |
T |
|
| Q |
117 |
gcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgagttactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||| |||||||||| |||||| |||| |||||||| |
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| T |
4834568 |
gcaccagctgcaacaacctataaaataaaatttcactctaaa-tgagaccccaattatgtaacaag---caaaaccaaatcaagcatttattagttactt |
4834473 |
T |
|
| Q |
217 |
attccgcaactcataacaagtgtaccttaacaccttctgcaataagaccttgagccaaaacaacagaggtagtagttccatcgccagccaagtcatttgt |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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| T |
4834472 |
att--------------------accttaacaccttctgcaataagaccctgagccaaaacaacagaggtggtagttccatcaccagccaaatcatttgt |
4834393 |
T |
|
| Q |
317 |
cttggcagccgcctgtctcaccaatttagcaccaatattctcaaccggatcctccaactccaccttttcaaccaaaatgcaaacataacatcaaatgaaa |
416 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| |
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| T |
4834392 |
cttggcggccgcctgtctaaccaatttagcaccaatattctcaaccggatcctccaactccacctttttaatgcaaatgcaaacagaacatcagatgaaa |
4834293 |
T |
|
| Q |
417 |
caccacacataactaattcaccaaaaa |
443 |
Q |
| |
|
|||| || ||||||||||||| ||||| |
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| T |
4834292 |
caccccatataactaattcactaaaaa |
4834266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Complemental strand, 4834209 - 4834177
Alignment:
| Q |
422 |
cacataactaattcaccaaaaacaataattcaa |
454 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
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| T |
4834209 |
cacataactaattcacctaaaacaataattcaa |
4834177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: scaffold0991
Description:
Target: scaffold0991; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 1425 - 1827
Alignment:
| Q |
17 |
aaaacaagaaaacggctttacctcttttgacattagtttaagttcagcaacaagagctttcgctgtcttctcaataccacgtgtgataagcacagggttt |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1425 |
aaaacaagaaaacggcttcacctcttttgacattagtttaagttcagcgacaagagctttcgctgtcttctcaatgccacgtgtgataagcacagggttt |
1524 |
T |
|
| Q |
117 |
gcaccagctgcaacaacctataaaataaaatttctctctaaaataaggccccaattatgtaacaagaagcaaaaccaaaccaagcagttatgagttactt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||| ||||||||||||| |||||| |||| |||||||| |
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| T |
1525 |
gcaccagctgcaacaacctataaaataaaatttcactct-aaatgagaccccaattatgtaac---aagcaaaaccaaatcaagcatttattagttactt |
1620 |
T |
|
| Q |
217 |
attccgcaactcataacaagtgtaccttaacaccttctgcaataagaccttgagccaaaacaacagaggtagtagttccatcgccagccaagtcatttgt |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| |
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|
| T |
1621 |
at--------------------taccttaacaccttctgcaataagaccctgagccaaaacaacagaggtggtagttccatcaccagccaaatcatttgt |
1700 |
T |
|
| Q |
317 |
cttggcagccgcctgtctcaccaatttagcaccaatattctcaaccggatcctccaactccaccttttcaaccaaaatgcaaacataacatcaaatgaaa |
416 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| |
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|
| T |
1701 |
cttggcggccgcctgtctaaccaatttagcaccaatattctcaaccggatcctccaactccacctttttaatgcaaatgcaaacagaacatcagatgaaa |
1800 |
T |
|
| Q |
417 |
caccacacataactaattcaccaaaaa |
443 |
Q |
| |
|
|||| || ||||||||||||| ||||| |
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|
| T |
1801 |
caccccatataactaattcactaaaaa |
1827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0991; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 1884 - 1916
Alignment:
| Q |
422 |
cacataactaattcaccaaaaacaataattcaa |
454 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
1884 |
cacataactaattcacctaaaacaataattcaa |
1916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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