View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_23 (Length: 490)
Name: NF1272_low_23
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 80 - 464
Target Start/End: Complemental strand, 6946134 - 6945747
Alignment:
| Q |
80 |
caccacagatccaaccaagagcctttccaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatgaactacatcccagaagattga |
179 |
Q |
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| T |
6946134 |
caccaaagatccaaccaagagccttttcaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatgaactacatcccagaagattga |
6946035 |
T |
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| Q |
180 |
ccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaaccgttagcgaatca |
279 |
Q |
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| T |
6946034 |
ccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaacagttaactgttagcgaatca |
6945935 |
T |
|
| Q |
280 |
aaagacaaag---ccctagctgttgccattaaagaaaactaaaatgagacctgcaagacaactaatacagaaacagagagacaaaacaccaatgtatcaa |
376 |
Q |
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| T |
6945934 |
aaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgagacaaaacaccaatgcatcaa |
6945835 |
T |
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| Q |
377 |
tctggtctgaaacttcaggtcactatatcgcccatacacaccatcggattcactcaccattgattaatgttgtaacctgtgcactttg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
6945834 |
tctggtctgaaacttcaggtcactatatcgcccatacacaccctcggattcacacaccattgattaatgttgtaacctgtgctctttg |
6945747 |
T |
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