View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_24 (Length: 484)
Name: NF1272_low_24
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 98 - 386
Target Start/End: Complemental strand, 15050189 - 15049901
Alignment:
| Q |
98 |
gcctcctgaagcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaacgcacctgatca |
197 |
Q |
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| T |
15050189 |
gcctcctgaggcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaacgcacctgatca |
15050090 |
T |
|
| Q |
198 |
ggtctttcttttgagataaattgtggcatcatgtattatattctttatatgttatacatgtttgtattcaatttgtcgacaacatggaacttatgctact |
297 |
Q |
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| T |
15050089 |
ggtctttcttttgagataaattgtggcatcatgtattatattctttatatgttatacatgtttgtattcaatttgtcgacaacatggaacttatgctact |
15049990 |
T |
|
| Q |
298 |
ctcattggatttaatgtctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttgatggtgat |
386 |
Q |
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| T |
15049989 |
ctcattggatttaatgtctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttgatggtgat |
15049901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 98 - 382
Target Start/End: Complemental strand, 15017420 - 15017132
Alignment:
| Q |
98 |
gcctcctgaagcaacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaac--gcacctgat |
195 |
Q |
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||||| ||| ||||||||||| || || | ||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||| | ||||||||| |
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| T |
15017420 |
gcctcttgaggcaacatggactgtgctaaaaaagtttggatataattatgatgtcaagcttgctgctgatttatttccgcctttgaagcttgcacctgat |
15017321 |
T |
|
| Q |
196 |
caggtctttcttttgagataaattgtggcatcatgtattatattctttatatgttatacatgtttgta-ttcaatttgtcgaca--acatggaacttatg |
292 |
Q |
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| T |
15017320 |
caggtgtttcttttgagataaattgtggcatcttgtattatgttctctatatgttatacctgtttgtatttcaatttgttgacaatatatggaacttatt |
15017221 |
T |
|
| Q |
293 |
ctactctcattggatttaatgtctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttgatgg |
382 |
Q |
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| T |
15017220 |
ctattctcattgg-tttaatgtatgcagagtgttgaattgacaaatgaagcagttgatttcttggagacaatctttgatgaatttgatgg |
15017132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 109 - 379
Target Start/End: Complemental strand, 17882715 - 17882436
Alignment:
| Q |
109 |
caacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaacg--cacctgatcaggtctttct |
206 |
Q |
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| T |
17882715 |
caacatggactgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttct |
17882616 |
T |
|
| Q |
207 |
tttgagataaattgtggcatcatgtattatattctttatatgttatacatgtttgtattcaatttgtcgacaacatggaa-------cttatgctactct |
299 |
Q |
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| T |
17882615 |
tttgagatgaattgtgacctcatgatttatgttcttagtatgttatacctgtttgtattcaattagttgacaacatggaacttgcatcttattctattca |
17882516 |
T |
|
| Q |
300 |
cattggatttaatgtctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttga |
379 |
Q |
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| T |
17882515 |
cgttggatttaatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttga |
17882436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 110 - 386
Target Start/End: Complemental strand, 14775341 - 14775058
Alignment:
| Q |
110 |
aacatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaac--gcacctgatcaggtctttctt |
207 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
14775341 |
aacatggaccgtgctcaggaagtttggatataatgatgatatcaagcttgctgataatttgattccacctttgaaacgtgcacctgatcaggtgtttctt |
14775242 |
T |
|
| Q |
208 |
ttgagataaattgtggcatca-tgtattatattctttatatgttatacatgtttgtattcaatttgtcgacaacatggaa-----cttatgctactctca |
301 |
Q |
| |
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|| |||| ||||||| | | | | | |||| ||||||||||||||||||||||||||||| |||||| || | | | || ||||| ||| ||||| |
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| T |
14775241 |
ttcagatgaattgtgaccttatttttttatgttctttatatgttatacatgtttgtattc-atttgttgagtataagaaacttatcttattctattctca |
14775143 |
T |
|
| Q |
302 |
ttggatttaatgtctccagagtgttgaattgactgatgaagcaattgatttcttggagacaatatttgatgaatttgatggtgat |
386 |
Q |
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| T |
14775142 |
tcggatttaatgtctgcagagtgttgagttaacaaatgaagcaatttgtttcttggagaaaatctttgatggacttgatggtgat |
14775058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 36874545 - 36874676
Alignment:
| Q |
239 |
tctttatatgttatacatgtttgtattcaatttgtcgacaacatggaac-------ttatgctactctcattggatttaatgtctccagagtgttgaatt |
331 |
Q |
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|||||||||||||||| ||||||| |||||||| | |||||| | || | |||| ||| |||| |||||||||| || | |||||||||||||| |
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| T |
36874545 |
tctttatatgttatacctgtttgtgttcaatttcttgacaacttagatcctatatcttattctattctctttggatttaacgtttgcagagtgttgaatt |
36874644 |
T |
|
| Q |
332 |
gactgatgaagcaattgatttcttggagacaa |
363 |
Q |
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||| |||||||||||||||||||| |||||| |
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| T |
36874645 |
gacacatgaagcaattgatttcttgaagacaa |
36874676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 36874401 - 36874492
Alignment:
| Q |
111 |
acatggaccgtactcaggaagtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaacgca--cctgatcaggt |
200 |
Q |
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| T |
36874401 |
acatggactgtgctcagaaagttcggatataatgatgaaatcaagcttgctgatgatgcagttccacctttgaagcgcactcctgatcaggt |
36874492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 53866658 - 53866753
Alignment:
| Q |
131 |
gtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaac--gcacctgatcaggtctttcttttgagataaattgtggc |
224 |
Q |
| |
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||||||||||||| |||||||||| ||| ||||| || || |||| |||||||| || ||||||||||| |||||||||| || || |||||| |
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| T |
53866658 |
gtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggc |
53866753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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