View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_25 (Length: 469)

Name: NF1272_low_25
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_25
NF1272_low_25
[»] chr7 (11 HSPs)
chr7 (11-240)||(29108385-29108614)
chr7 (274-440)||(29075487-29075653)
chr7 (274-440)||(29108649-29108815)
chr7 (116-240)||(29075330-29075454)
chr7 (10-123)||(29074854-29074967)
chr7 (371-440)||(29857243-29857312)
chr7 (319-439)||(29888218-29888343)
chr7 (383-441)||(29860867-29860926)
chr7 (319-441)||(29896950-29897077)
chr7 (319-439)||(29904554-29904678)
chr7 (374-440)||(29879088-29879155)
[»] chr1 (1 HSPs)
chr1 (138-203)||(4365937-4366002)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 29108385 - 29108614
Alignment:
Q  11 ttattctaatagttttattacctgttgggaaattgtgttttgtattagctattcatggcgttaatatggcaggaaaggaaagtaggactgcacagagctg 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29108385 ttattcttatagttttattacctgttgggaaattgtgttttgtattagctattcatggcgttaatatggcaggaaaggaaagtaggactgcacagagctg 29108484  T
Q  111 atgcaccagcatggaatgccgctgtcgctcatatccgaaggaagctgaactctgatatgctcaaccttgtggatttcaattttcatttctacagaaatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29108485 atgcaccagcatggaatgccgctgtcgctcatatccgaaggaagctgaactctgatatgctcaaccttgtggatttcaattttcatttctacagaaatca 29108584  T
Q  211 gattcatgaactctttttgtcgaagtacac 240  Q
    ||||||||||||||||||||||||||||||    
T  29108585 gattcatgaactctttttgtcgaagtacac 29108614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 274 - 440
Target Start/End: Original strand, 29075487 - 29075653
Alignment:
Q  274 ggttctgggtaccatagatttctctgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttgtgattgactatattgtccaattactaatcta 373  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29075487 ggttctgggtaccatagatttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttatgattgactatattgtccaattactaatcta 29075586  T
Q  374 taaaccattttattaaatcttgattatcattgacctattcaattattaagctttgttgatgcattac 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29075587 taaaccattttattaaatcttgattatcattgacctattcaattattaagctttgttgatgcattac 29075653  T

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Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 274 - 440
Target Start/End: Original strand, 29108649 - 29108815
Alignment:
Q  274 ggttctgggtaccatagatttctctgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttgtgattgactatattgtccaattactaatcta 373  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29108649 ggttctgggtaccatagatttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttgtgattgactatattgtccaattagtaatcta 29108748  T
Q  374 taaaccattttattaaatcttgattatcattgacctattcaattattaagctttgttgatgcattac 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29108749 taaaccattttattaaatcttgattatcattgacctattcaattattaagctttgttgatgcattac 29108815  T

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Target: chr7; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 29075330 - 29075454
Alignment:
Q  116 ccagcatggaatgccgctgtcgctcatatccgaaggaagctgaactctgatatgctcaaccttgtggatttcaattttcatttctacagaaatcagattc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29075330 ccagcatggaatgccgctgtcgctcatatccgaaggaagctgaactctgatatgctcaaccttgtggatttcaattttcatttccacagaaatcagattc 29075429  T
Q  216 atgaactctttttgtcgaagtacac 240  Q
    |||||||||||||||||||||||||    
T  29075430 atgaactctttttgtcgaagtacac 29075454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 29074854 - 29074967
Alignment:
Q  10 attattctaatagttttattacctgttgggaaattgtgttttgtattagctattcatggcgttaatatggcaggaaaggaaagtaggactgcacagagct 109  Q
    |||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29074854 attattcttatagttttaatacctgttgggaaattttgctttgtattagctattcatggcgttaatatggcaggaaaggaaaataggactgcacagagct 29074953  T
Q  110 gatgcaccagcatg 123  Q
    ||||||||||||||    
T  29074954 gatgcaccagcatg 29074967  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 29857243 - 29857312
Alignment:
Q  371 ctataaaccattttattaaatcttgattatcattgacctattcaattattaagctttgttgatgcattac 440  Q
    ||||||||||||||| ||||  || ||||||||||  |||| ||||||||||||||||||||||||||||    
T  29857243 ctataaaccattttaataaagatttattatcattggtctatccaattattaagctttgttgatgcattac 29857312  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 439
Target Start/End: Original strand, 29888218 - 29888343
Alignment:
Q  319 ggtgtttatgcatttaagggtttgtgattgactatattgtccaattactaa-----tctataaaccattttattaaatcttgattatcattgacctattc 413  Q
    ||||||||||||| ||||||||| ||||||| ||| ||  |||||||||||     ||||||||||||  |||||||  |||||| ||||  |||||| |    
T  29888218 ggtgtttatgcatgtaagggtttatgattgattatgttacccaattactaatctattctataaaccatgctattaaagtttgattgtcatcaacctatcc 29888317  T
Q  414 aattattaagctttgttgatgcatta 439  Q
    ||||||||| || |||||||||||||    
T  29888318 aattattaacctctgttgatgcatta 29888343  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 29860867 - 29860926
Alignment:
Q  383 ttattaaatcttgattatcattgacctattcaattattaagctttg-ttgatgcattact 441  Q
    |||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  29860867 ttattaaagcctgattatcattgacctattcaattattaagttttgtttgatgcattact 29860926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 441
Target Start/End: Original strand, 29896950 - 29897077
Alignment:
Q  319 ggtgtttatgcatttaagggtttgtgattgactatattgtccaattactaat-----ctataaaccattttattaaatcttgattatcattgacctattc 413  Q
    |||||||||| |||||||||||| || |||| ||| || |||||||||||||     ||||||||||| |||| ||||||||||  | ||| ||||||||    
T  29896950 ggtgtttatgaatttaagggtttatgtttgattatgttatccaattactaatctatactataaaccatgttatgaaatcttgatcgttattaacctattc 29897049  T
Q  414 aattattaagctttgttgatgcattact 441  Q
     |||||||| || | |||||| ||||||    
T  29897050 tattattaacctctattgatgtattact 29897077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 439
Target Start/End: Original strand, 29904554 - 29904678
Alignment:
Q  319 ggtgtttatgcatttaagggtttgtgattgactatattgtccaatta-----ctaatctataaaccattttattaaatcttgattatcattgacctattc 413  Q
    ||||| ||||||||||||||||| || |||| ||| || ||||||||     |||| ||||||||||| |||||||| | ||||| ||| |||||||| |    
T  29904554 ggtgtgtatgcatttaagggtttatgtttgattatgttatccaattacgaatctaaactataaaccatattattaaagcatgattgtca-tgacctatcc 29904652  T
Q  414 aattattaagctttgttgatgcatta 439  Q
    ||||||||| ||  ||||||||||||    
T  29904653 aattattaacctcagttgatgcatta 29904678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 29879088 - 29879155
Alignment:
Q  374 taaaccattttattaaatcttgattatcattgacctattcaatta-ttaagctttgttgatgcattac 440  Q
    ||||||||||||||||| ||||||||||||| |||| || ||| | |||||| ||||||| |||||||    
T  29879088 taaaccattttattaaagcttgattatcattaacctgttgaataatttaagcattgttgacgcattac 29879155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 4366002 - 4365937
Alignment:
Q  138 ctcatatccgaaggaagctgaactctgatatgctcaaccttgtggatttcaattttcatttctaca 203  Q
    |||||||  ||||||| |||||||||||| | | |||||||||||| || | ||||||||||||||    
T  4366002 ctcatataagaaggaatctgaactctgatgtacacaaccttgtggacttgagttttcatttctaca 4365937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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