View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_28 (Length: 449)
Name: NF1272_low_28
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 52269608 - 52269461
Alignment:
| Q |
36 |
ccaagtatacataggaagaagaagcatgctagcaaggatgggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaacatgtt |
135 |
Q |
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| T |
52269608 |
ccaagtatacataggaagaagaagcatgctagcaaggatgggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaacatgtt |
52269509 |
T |
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| Q |
136 |
tgcgtgattaggaatagggattattgtaataatagaatgtgtgaatgg |
183 |
Q |
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| T |
52269508 |
tgcgtgattaggaatagggattattgtaataatagaatgtgtgaatgg |
52269461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 282 - 444
Target Start/End: Complemental strand, 52269297 - 52269135
Alignment:
| Q |
282 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccgacaacagtgggaataatttatttcattttcatattgaaaat |
381 |
Q |
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| T |
52269297 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccaacaacagtgggaataatttatttcaattttatattgaagat |
52269198 |
T |
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| Q |
382 |
tcaatcaaatcttcattttctatccaaaccaaattgccagttttctaacgttgcatctgtggt |
444 |
Q |
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| T |
52269197 |
tcaatcaaatcttaattttctatccaaaccaaattaccagttttctaacgttgcctttgtggt |
52269135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 186 - 286
Target Start/End: Complemental strand, 52269430 - 52269330
Alignment:
| Q |
186 |
ggtgagttggtttaaaatataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaatta |
285 |
Q |
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| T |
52269430 |
ggtgagttggtttaaaatataagggaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaatta |
52269331 |
T |
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| Q |
286 |
t |
286 |
Q |
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| T |
52269330 |
t |
52269330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 30 - 282
Target Start/End: Original strand, 13743676 - 13743934
Alignment:
| Q |
30 |
aattacccaagtatacataggaagaagaagcatgctagcaaggatgggagtgggaacaataatgagcaagagtaggattactgttaatttgatataacaa |
129 |
Q |
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| T |
13743676 |
aattacccaagtatacataggaagaagaggcatgctagcaaggatgagagtgggaacaat---gagaaagaataggattactgt-----------aacat |
13743761 |
T |
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| Q |
130 |
catgtttgcgtgattaggaatagggattattgtaataatagaatgtgtgaatgg---------------gt-----ggtgagttggtttaaaatataagg |
209 |
Q |
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| T |
13743762 |
catgtttgagtgattaggaatagggattattgtaataatagaatgtgtgagtggagagacgataacggagtctatgggtgagttggtttaaaatataagg |
13743861 |
T |
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| Q |
210 |
gaaagctagggaagtctaaggggaaggaggtattaagggttcttttgctgcccttggaagtgttgcttattaa |
282 |
Q |
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| T |
13743862 |
gaaaactagggaagtctatggggaagggggtattaagggttcttttgctgcccttggaagtgttgcttattaa |
13743934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 375
Target Start/End: Original strand, 13743965 - 13744059
Alignment:
| Q |
282 |
attatgtttgtcattttcttgtcgcgagtcactggatttcttcctcctttgttcacccgacaacagtgggaataatt-tatttcattttcatatt |
375 |
Q |
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| T |
13743965 |
attatgtttgtaattttcttgtattgagccactggatttcttcttcctttgttcacccaacaacagtgggaatcattctatttcatttttatatt |
13744059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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