View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_32 (Length: 424)
Name: NF1272_low_32
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 14044443 - 14044663
Alignment:
| Q |
15 |
gatggaccgtagagcaattctctttggttttatgcaattggaagttacactatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttct |
114 |
Q |
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| T |
14044443 |
gatggaccgtagagcaattctctttggttttgtgcaataggaagttatattatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttct |
14044542 |
T |
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| Q |
115 |
actaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagatattattgccattctttctaaacagagtgcaaaacaaattctacattaacga |
214 |
Q |
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| T |
14044543 |
actaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagatattattgccattctttctaaacagagtgca----aaattctacattaacga |
14044638 |
T |
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| Q |
215 |
tagattcttacatgttgtgttaagt |
239 |
Q |
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| T |
14044639 |
tagattcttacatgttgtgttaagt |
14044663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 13930409 - 13930482
Alignment:
| Q |
182 |
aaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcatgtata |
255 |
Q |
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| T |
13930409 |
aaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcatgtata |
13930482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
| Q |
85 |
aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagt |
142 |
Q |
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| T |
13930348 |
aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt |
13930405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 13476285 - 13476233
Alignment:
| Q |
266 |
agatgactgtgaactttgaagatgtatcacggaagaagataaaaatgtattac |
318 |
Q |
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| T |
13476285 |
agatgacagtaatctttgaagatgtaccacggaaaaagataaaaatgtattac |
13476233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 13476332 - 13476292
Alignment:
| Q |
184 |
acagagtgcaaaacaaattctacattaacgatagattctta |
224 |
Q |
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| T |
13476332 |
acagagtgcgaaaccaattctacattaacgatagattctta |
13476292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 13930263 - 13930293
Alignment:
| Q |
15 |
gatggaccgtagagcaattctctttggtttt |
45 |
Q |
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| T |
13930263 |
gatggaccgtagagcaattctctttggtttt |
13930293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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