View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_35 (Length: 415)
Name: NF1272_low_35
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 40322334 - 40321931
Alignment:
| Q |
1 |
ttttacatgctaaatgtgcgaatttaaaaaacatatgnnnnnnnnntaagtgaatggaattttaactgacttgaagacggagagcaagcagaatgctgag |
100 |
Q |
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| T |
40322334 |
ttttacatgctaaatatgcgaatttaaaaaacatatgaaaaaaaaataagtgaatggaattttaactcacttgaagacggagagcaagcagaatgctgag |
40322235 |
T |
|
| Q |
101 |
agttccaatccaattcaactgcaactatatcctatcaattaatgtgattgaatttgcttagggatgtcaaactatttagggaaaaagaagaatatatata |
200 |
Q |
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| T |
40322234 |
atttccaatccaattcaactgcaactatatcctatcaattaatgtgattgaatttgcttagggatgtcaaactatgtagggaaaaagaagaatatatata |
40322135 |
T |
|
| Q |
201 |
ctta------------------cttgaagaaatttgtaggaaggaatatatatatgtcaacacgtaaatatgccaagttgccaaacaaagcagtagtatg |
282 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40322134 |
tatatatatatatatatatatacttgtagaaatttgtaggaaggaatatatatatgtcaacacgtaaatatgccaagttgccaa-caaagcagtagtatg |
40322036 |
T |
|
| Q |
283 |
tcaacgcgcaaatatggcaacacgcagtaagaatcagtcaaagcagaaagcaatggctctaccaacctttgcctttggacactagcgacagtgtgtgaca |
382 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40322035 |
tcaacgcgcaaatatgccaacacgcagtaagaatcagtcaaagcagaaagcaatggctctaccaacctttgcctttggacactagtgacagtgtgtgaca |
40321936 |
T |
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| Q |
383 |
ccatt |
387 |
Q |
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||||| |
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| T |
40321935 |
ccatt |
40321931 |
T |
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