View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_38 (Length: 394)
Name: NF1272_low_38
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 12640996 - 12640675
Alignment:
| Q |
14 |
aaataaaccacaattaaaacaacaagagtgatgatcaatatcacattagctcttttccattccttcctaagatttgccaacaaaccagccttgcatgagt |
113 |
Q |
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| T |
12640996 |
aaataaaccacaattaaaacgacaacagtgatgatcaatatcacattagctcttttccattccttcctaagatttgccaacaaaccagccttgcatgagt |
12640897 |
T |
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| Q |
114 |
cacaattgtaacaaagtgttgtttggtcgttgctccattgaagacaatccatgtcagctgcattgtttattggactaatccaatatgttgggttcacaaa |
213 |
Q |
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| T |
12640896 |
cacagttgtaacaaagtgttgtttggtcgttgctccattgaagacaatccatgtcagctgcattgtttattggactaatccaatatgttgggttcacaaa |
12640797 |
T |
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| Q |
214 |
tgtgtatgcacattgtgttggtggtttgcagcacccagactgaaaataattaaagaaaaatttattggcaaaatatatgttagtgaagaagaaagtgata |
313 |
Q |
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| T |
12640796 |
tgtgtatgcacattgtgttggtggtttgcagcacccagactgaaaataattaaagaaaaatttattggcaaaatatatgtaagt---gaagaaagtgata |
12640700 |
T |
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| Q |
314 |
gaatttaattaagtgtgtttcataa |
338 |
Q |
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| T |
12640699 |
gaatttaattaagtgtgtttcataa |
12640675 |
T |
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Back To:
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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 27780402 - 27780209
Alignment:
| Q |
50 |
aatatcacattagctcttttccattccttcctaagatttgccaacaaaccagccttgcatgagtcacaattgtaacaaagtgttgtttggtcgttgctcc |
149 |
Q |
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||||||||||| ||| | ||||||| |||||| | |||| ||||||||||| ||||||||||||||||| || |||||| |||||| || ||||||| |
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| T |
27780402 |
aatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcacaattatagcaaagttgtgtttgttcattgctcc |
27780303 |
T |
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| Q |
150 |
attgaagacaatccatgtcagctgcattgtttattggactaatccaatatgttgggttcacaaatgtgtatgcacattgtgttggtggtttgca |
243 |
Q |
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| T |
27780302 |
atttcatgcaatccatgtcttcatttgtgttaattgggctaatccaatatgttgggttcacaaatgtgtaaccacattttgttggtggtttgca |
27780209 |
T |
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