View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_39 (Length: 392)
Name: NF1272_low_39
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 45242096 - 45242412
Alignment:
| Q |
10 |
aaaagaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctata--cataccatat |
107 |
Q |
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| T |
45242096 |
aaaagaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctatatacataccatat |
45242195 |
T |
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| Q |
108 |
ttaaatttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttca |
207 |
Q |
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| T |
45242196 |
ttaaatttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttca |
45242295 |
T |
|
| Q |
208 |
actttcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacagcaaatgggttttcagcgataaggagaa |
307 |
Q |
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| T |
45242296 |
actttcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacaacaaatgggttttcagggataaggagaa |
45242395 |
T |
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| Q |
308 |
tgtagatagggcgtagt |
324 |
Q |
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||||||| ||||||||| |
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| T |
45242396 |
tgtagatggggcgtagt |
45242412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 11425493 - 11425447
Alignment:
| Q |
124 |
aaacccaaacaacactaccgtacaactaacacaggttgaaccaaaat |
170 |
Q |
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| T |
11425493 |
aaacccaaacaacactaccatacgactaacacgtgttgaaccaaaat |
11425447 |
T |
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