View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_40 (Length: 390)
Name: NF1272_low_40
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 52 - 355
Target Start/End: Complemental strand, 6359014 - 6358705
Alignment:
| Q |
52 |
acaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatct |
151 |
Q |
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| T |
6359014 |
acaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatct |
6358915 |
T |
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| Q |
152 |
gttccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaag------nnnnnnnnnnnnncaaaggtct |
245 |
Q |
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| T |
6358914 |
attccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaagaagaaaaaaaaaaaaaaaaaaaaggtct |
6358815 |
T |
|
| Q |
246 |
cgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctacttagacg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6358814 |
cgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctacttagacg |
6358715 |
T |
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| Q |
346 |
agataaaaaa |
355 |
Q |
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|||||||||| |
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| T |
6358714 |
agataaaaaa |
6358705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 32857478 - 32857631
Alignment:
| Q |
52 |
acaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatct |
151 |
Q |
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||||||| ||||||||||||||||| |||| || | | |||||||| ||||||||||||| | | || |||||||| | |||| |||||||||||||| |
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| T |
32857478 |
acaagttctagtcagaaatgttaaaggatactgccattggaagaaggcttagaagcttcttctaatagaaattttatttcagttgcaatttgctttatct |
32857577 |
T |
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| Q |
152 |
gttccttgtacctaactaacccacattcttggcattggaatgattttccatctt |
205 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
32857578 |
cttccttgtctctaactaacccacattcttggcattgaaatgcttttccatctt |
32857631 |
T |
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