View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_44 (Length: 376)
Name: NF1272_low_44
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 9490230 - 9490562
Alignment:
| Q |
30 |
gcatgaatcttccaactcggagattttcaactcaccgaatacagcataattggaagagttgtttaaacctttgttacaagatgaagtatccatgtaaagt |
129 |
Q |
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| T |
9490230 |
gcatgaatcctccaactcagagattttcaagtcaccaagtacagcataattggaagagttgatcaatcctttgttacaagatgaagtatccatgtaaagt |
9490329 |
T |
|
| Q |
130 |
ggagaattaattgaagctgcacagcttataaatgctatggtttctaagttattagtatctaacaagctataaggtttatcagtggtgaagttttcatttg |
229 |
Q |
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| T |
9490330 |
ggagaattaattgaagctgcacagcttataaatgctatggtttctaagttattagtatctaacaagctataaggtttatcagtggtgaagttttcatttg |
9490429 |
T |
|
| Q |
230 |
ttaaagtgtatagaggaattgaagaacaaatttctttgttcagacctgaatctatgatccttattgtggaatttttgtagttgatggattctacaaagta |
329 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9490430 |
ttaaagtgtatagaggaattgaagagcaattttctttgttcagacctgaatctatgatccttattgtggaatttttgtagttgatggattctacaaagta |
9490529 |
T |
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| Q |
330 |
ctttccattgtatagatttagtattgtttgatt |
362 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9490530 |
ttttccattgtatagatttagtattgtttgatt |
9490562 |
T |
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